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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • WBP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:257.3 nTPM
FANTOM5:506.9 Scaled Tags Per Million
Pig:300.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA065682
Glial cells Not detected
Neuronal cells Medium

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 257.3
Samples: 300

Max nTPM: 421.3
Min nTPM: 145.3
Std nTPM: 49.1
Median nTPM: 258.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 421.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 399.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 397.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 392.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 391.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 387.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 383.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 374.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 373.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 372.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 369.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 366.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 360.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 356.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 352.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 351.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 347.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 344.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 341.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 337.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 335.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 335.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 332.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 332.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 328.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 322.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 321.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 316.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 315.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 314.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 311.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 310.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 309.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 309.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 308.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 307.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 306.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 306.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 305.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 305.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 303.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 303.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 303.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 303.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 301.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 300.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 300.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 298.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 298.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 297.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 297.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 297.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 296.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 296.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 296.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 295.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 295.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 294.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 293.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 293.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 293.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 292.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 292.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 291.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 291.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 291.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 290.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 290.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 289.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 289.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 289.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 288.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 288.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 288.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 287.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 286.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 285.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 284.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 284.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 283.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 283.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 282.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 281.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 281.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 281.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 280.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 279.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 279.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 279.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 279.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 278.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 278.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 278.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 277.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 274.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 274.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 274.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 273.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 272.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 272.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 272.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 272.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 272.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 272.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 271.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 271.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 271.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 270.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 270.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 268.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 268.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 268.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 268.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 268.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 268.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 268.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 268.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 267.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 267.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 267.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 267.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 267.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 266.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 265.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 265.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 265.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 264.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 264.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 264.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 263.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 263.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 263.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 263.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 263.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 263.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 263.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 262.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 262.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 261.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 261.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 260.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 259.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 259.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 259.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 259.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 259.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 259.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 258.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 258.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 258.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 258.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 257.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 257.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 257.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 256.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 256.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 255.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 254.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 254.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 254.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 252.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 252.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 252.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 251.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 251.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 251.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 251.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 250.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 250.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 250.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 250.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 249.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 248.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 248.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 248.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 247.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 247.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 246.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 245.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 245.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 243.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 242.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 242.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 241.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 241.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 240.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 240.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 240.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 239.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 239.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 238.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 237.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 237.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 237.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 236.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 235.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 235.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 234.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 233.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 233.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 232.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 232.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 231.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 230.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 230.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 230.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 230.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 229.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 229.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 229.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 229.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 229.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 228.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 228.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 227.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 226.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 226.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 225.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 224.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 224.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 222.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 222.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 222.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 222.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 221.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 221.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 220.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 218.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 218.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 218.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 217.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 217.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 216.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 215.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 215.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 215.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 214.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 214.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 214.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 213.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 213.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 212.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 211.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 211.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 211.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 211.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 211.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 210.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 209.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 209.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 209.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 209.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 208.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 207.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 207.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 207.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 206.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 206.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 206.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 206.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 204.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 203.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 203.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 202.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 201.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 200.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 200.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 200.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 199.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 199.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 199.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 198.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 198.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 196.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 195.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 193.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 188.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 187.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 186.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 185.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 183.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 183.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 182.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 181.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 181.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 180.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 180.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 179.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 179.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 179.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 176.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 176.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 176.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 173.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 172.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 172.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 170.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 149.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 148.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 145.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

506.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 506.9
FF:10164-103B2 76 years, female 506.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.2
Pig sample Sample description nTPM
Caudate
nTPM: 300.2
Samples: 4

Max nTPM: 324.1
Min nTPM: 254.2
Sample A Female 254.2
Sample B Female 312.3
Sample C Male 324.1
Sample D Male 310.2

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