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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • DLG4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:145.9 nTPM
FANTOM5:959.8 Scaled Tags Per Million
Pig:281.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA010122Antibody HPA071006Antibody CAB001999Antibody CAB002000
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells HighHighMediumNot detected








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 145.9
Samples: 300

Max nTPM: 364.0
Min nTPM: 13.1
Std nTPM: 77.0
Median nTPM: 146.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 364.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 311.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 306.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 303.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 293.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 291.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 288.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 284.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 280.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 275.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 274.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 274.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 272.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 271.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 270.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 267.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 267.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 265.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 265.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 257.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 256.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 255.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 253.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 252.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 252.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 251.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 251.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 251.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 248.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 247.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 245.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 243.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 242.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 242.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 242.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 241.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 240.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 239.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 237.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 237.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 236.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 235.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 234.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 232.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 232.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 232.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 230.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 230.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 229.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 227.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 226.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 226.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 225.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 224.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 223.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 220.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 220.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 220.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 217.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 217.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 216.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 216.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 215.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 214.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 213.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 213.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 210.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 210.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 209.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 209.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 209.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 209.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 208.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 207.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 207.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 206.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 205.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 204.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 203.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 203.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 203.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 203.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 201.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 200.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 200.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 199.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 197.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 197.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 197.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 197.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 197.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 194.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 194.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 193.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 191.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 191.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 191.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 190.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 189.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 189.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 188.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 188.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 187.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 187.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 186.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 186.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 185.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 184.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 184.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 183.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 183.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 182.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 181.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 181.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 180.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 180.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 178.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 178.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 177.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 176.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 175.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 172.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 172.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 171.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 171.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 171.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 169.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 169.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 167.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 167.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 165.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 164.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 163.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 163.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 161.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 161.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 161.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 160.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 159.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 158.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 155.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 154.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 154.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 153.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 152.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 150.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 150.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 148.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 147.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 146.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 146.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 146.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 145.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 143.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 143.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 143.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 143.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 142.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 141.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 139.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 139.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 139.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 138.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 138.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 136.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 135.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 135.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 134.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 133.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 133.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 132.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 131.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 130.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 129.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 129.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 128.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 126.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 125.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 124.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 124.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 124.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 124.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 122.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 122.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 121.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 121.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 120.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 120.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 120.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 118.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 117.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 115.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 113.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 112.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 109.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 108.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 107.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 107.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 106.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 105.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 104.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 96.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 95.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 95.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 93.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 92.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 92.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 91.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 90.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 89.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 88.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 87.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 87.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 81.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 80.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 80.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 78.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 76.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 75.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 75.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 74.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 73.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 73.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 73.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 72.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 70.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 69.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 69.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 69.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 69.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 67.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 67.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 66.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 65.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 64.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 64.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 63.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 62.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 61.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 61.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 60.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 60.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 59.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 58.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 57.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 57.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 56.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 55.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 55.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 54.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 53.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 52.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 52.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 51.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 50.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 50.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 50.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 49.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 49.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 47.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 47.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 46.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 46.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 45.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 45.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 45.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 45.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 43.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 42.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 42.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 41.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 41.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 40.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 40.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 40.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 39.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 39.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 39.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 38.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 36.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 35.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 34.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 33.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 32.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 32.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 31.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 31.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 31.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 30.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 30.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 27.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 26.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 25.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 22.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 22.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 21.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 20.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 19.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 17.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 13.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

959.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 959.8
FF:10164-103B2 76 years, female 959.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

281.9
Pig sample Sample description nTPM
Caudate
nTPM: 281.9
Samples: 4

Max nTPM: 347.3
Min nTPM: 215.2
Sample A Female 215.2
Sample B Female 296.7
Sample C Male 347.3
Sample D Male 268.5

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