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  • SYT11
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:122.9 nTPM
FANTOM5:567.7 Scaled Tags Per Million
Pig:259.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA064091
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 122.9
Samples: 300

Max nTPM: 203.0
Min nTPM: 53.3
Std nTPM: 25.9
Median nTPM: 121.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 203.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 185.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 183.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 180.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 178.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 178.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 177.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 174.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 173.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 173.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 171.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 169.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 169.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 168.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 167.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 167.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 165.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 164.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 163.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 163.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 162.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 160.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 160.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 160.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 159.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 159.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 159.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 159.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 159.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 157.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 156.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 154.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 154.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 154.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 153.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 153.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 152.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 152.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 152.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 152.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 151.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 151.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 151.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 150.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 150.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 149.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 148.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 147.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 147.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 147.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 146.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 145.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 145.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 144.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 144.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 144.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 144.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 143.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 143.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 143.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 143.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 143.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 143.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 142.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 142.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 142.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 142.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 141.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 141.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 141.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 141.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 140.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 140.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 140.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 139.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 139.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 138.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 138.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 138.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 138.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 138.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 138.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 138.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 138.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 137.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 137.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 137.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 136.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 136.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 136.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 136.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 136.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 136.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 135.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 135.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 134.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 134.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 134.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 134.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 134.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 134.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 133.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 133.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 133.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 133.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 132.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 132.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 132.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 132.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 131.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 131.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 131.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 130.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 130.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 130.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 130.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 129.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 129.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 128.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 128.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 128.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 128.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 127.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 127.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 127.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 127.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 127.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 127.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 127.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 126.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 126.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 126.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 126.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 125.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 125.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 125.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 124.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 124.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 124.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 124.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 124.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 123.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 123.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 123.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 123.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 123.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 122.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 122.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 122.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 122.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 121.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 121.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 120.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 120.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 120.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 120.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 120.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 120.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 120.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 120.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 120.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 120.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 120.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 119.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 119.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 119.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 119.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 119.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 119.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 119.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 118.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 118.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 118.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 118.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 118.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 117.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 117.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 117.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 117.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 117.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 117.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 117.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 116.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 116.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 116.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 116.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 115.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 115.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 115.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 114.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 114.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 114.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 114.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 113.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 113.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 113.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 112.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 112.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 112.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 112.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 112.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 111.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 111.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 111.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 111.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 111.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 111.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 110.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 110.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 110.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 109.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 109.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 109.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 108.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 108.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 108.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 108.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 108.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 108.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 108.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 108.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 107.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 107.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 107.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 107.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 107.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 106.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 106.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 106.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 106.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 105.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 105.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 105.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 105.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 105.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 105.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 104.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 104.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 103.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 103.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 102.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 101.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 101.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 101.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 100.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 99.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 98.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 98.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 98.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 97.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 97.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 97.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 97.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 96.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 95.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 95.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 93.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 93.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 92.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 92.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 91.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 91.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 91.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 91.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 90.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 90.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 90.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 89.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 89.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 89.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 89.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 89.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 88.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 88.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 87.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 87.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 86.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 85.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 85.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 85.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 85.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 84.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 83.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 82.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 77.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 75.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 75.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 71.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 71.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 71.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 69.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 65.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 65.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 64.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 61.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 58.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 57.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 56.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 53.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

567.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 567.7
FF:10164-103B2 76 years, female 567.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.1
Pig sample Sample description nTPM
Caudate
nTPM: 259.1
Samples: 4

Max nTPM: 298.5
Min nTPM: 238.6
Sample A Female 238.6
Sample B Female 252.4
Sample C Male 298.5
Sample D Male 247.0

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