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HSPBP1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • HSPBP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:99.3 nTPM
FANTOM5:38.8 Scaled Tags Per Million
Pig:31.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA071444
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 99.3
Samples: 300

Max nTPM: 202.3
Min nTPM: 23.5
Std nTPM: 33.6
Median nTPM: 98.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 202.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 187.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 186.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 181.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 181.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 176.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 171.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 170.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 169.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 167.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 167.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 165.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 165.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 162.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 162.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 159.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 159.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 158.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 158.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 157.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 150.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 150.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 148.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 146.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 145.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 145.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 144.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 143.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 143.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 141.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 141.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 141.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 141.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 141.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 141.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 140.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 140.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 140.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 139.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 139.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 138.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 138.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 137.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 136.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 136.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 136.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 135.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 134.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 133.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 133.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 133.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 132.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 131.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 131.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 131.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 131.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 130.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 130.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 129.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 129.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 129.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 128.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 128.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 128.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 127.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 127.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 126.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 126.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 126.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 126.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 126.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 125.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 124.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 124.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 123.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 123.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 122.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 120.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 120.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 120.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 119.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 119.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 117.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 117.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 116.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 116.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 116.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 115.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 114.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 112.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 111.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 111.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 111.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 111.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 111.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 110.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 110.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 110.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 110.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 110.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 109.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 109.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 109.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 109.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 109.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 109.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 108.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 108.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 108.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 107.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 107.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 107.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 106.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 106.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 106.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 106.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 105.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 105.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 104.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 104.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 104.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 103.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 103.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 103.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 103.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 102.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 101.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 101.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 101.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 100.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 100.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 100.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 100.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 100.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 100.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 100.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 99.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 99.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 99.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 99.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 99.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 99.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 98.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 98.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 98.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 98.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 98.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 98.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 98.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 98.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 97.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 97.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 97.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 97.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 96.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 95.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 95.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 95.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 94.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 94.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 94.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 94.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 94.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 94.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 94.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 93.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 93.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 93.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 93.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 92.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 92.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 91.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 91.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 91.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 90.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 90.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 90.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 89.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 88.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 88.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 87.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 85.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 85.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 85.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 85.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 84.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 84.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 84.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 84.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 84.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 84.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 84.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 83.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 83.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 83.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 83.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 83.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 82.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 81.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 81.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 81.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 81.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 80.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 80.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 80.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 80.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 79.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 79.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 79.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 78.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 78.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 77.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 77.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 76.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 75.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 75.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 75.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 74.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 74.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 73.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 73.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 73.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 73.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 72.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 72.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 72.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 71.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 71.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 71.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 70.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 70.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 70.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 70.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 69.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 69.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 69.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 69.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 68.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 68.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 68.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 67.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 67.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 67.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 66.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 66.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 66.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 66.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 65.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 65.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 65.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 64.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 64.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 64.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 63.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 63.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 63.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 63.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 62.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 62.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 62.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 62.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 61.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 60.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 60.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 59.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 59.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 59.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 59.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 59.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 58.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 57.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 57.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 56.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 54.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 54.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 53.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 53.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 51.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 50.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 50.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 50.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 50.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 49.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 48.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 48.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 47.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 46.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 46.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 46.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 43.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 43.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 43.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 43.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 42.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 41.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 41.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 40.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 34.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 23.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

38.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 38.8
FF:10164-103B2 76 years, female 38.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.0
Pig sample Sample description nTPM
Caudate
nTPM: 31.0
Samples: 4

Max nTPM: 35.7
Min nTPM: 26.4
Sample A Female 26.4
Sample B Female 35.3
Sample C Male 35.7
Sample D Male 26.6

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