We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CNDP2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CNDP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:114.3 nTPM
FANTOM5:107.4 Scaled Tags Per Million
Pig:46.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA036898Antibody HPA036899Antibody CAB026196
Glial cells LowMediumHigh
Neuronal cells LowNot detectedLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 114.3
Samples: 300

Max nTPM: 241.0
Min nTPM: 63.3
Std nTPM: 27.6
Median nTPM: 109.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 241.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 216.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 212.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 202.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 193.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 192.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 186.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 185.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 176.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 172.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 170.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 170.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 169.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 169.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 168.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 167.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 165.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 163.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 163.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 162.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 160.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 160.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 157.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 157.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 156.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 156.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 155.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 155.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 153.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 153.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 153.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 152.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 151.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 149.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 149.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 148.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 148.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 148.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 146.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 146.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 145.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 144.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 143.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 142.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 142.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 141.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 140.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 140.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 139.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 139.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 138.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 137.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 136.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 135.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 135.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 135.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 135.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 135.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 134.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 134.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 133.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 132.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 132.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 131.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 131.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 131.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 130.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 129.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 129.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 129.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 128.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 127.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 127.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 127.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 127.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 126.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 126.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 125.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 124.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 124.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 124.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 124.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 124.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 124.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 123.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 123.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 123.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 122.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 122.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 122.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 122.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 122.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 121.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 121.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 121.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 121.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 121.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 121.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 120.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 120.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 120.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 120.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 119.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 119.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 119.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 119.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 119.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 119.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 119.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 118.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 118.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 118.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 118.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 117.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 117.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 117.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 117.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 116.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 116.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 115.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 115.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 115.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 115.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 115.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 115.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 115.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 114.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 114.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 114.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 113.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 112.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 112.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 111.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 111.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 111.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 111.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 111.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 110.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 110.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 110.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 110.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 110.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 110.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 110.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 110.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 110.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 110.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 110.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 110.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 109.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 109.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 109.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 109.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 108.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 108.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 107.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 107.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 107.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 107.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 107.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 107.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 107.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 106.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 106.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 106.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 106.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 106.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 106.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 106.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 105.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 105.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 105.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 105.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 104.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 104.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 104.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 104.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 104.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 103.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 103.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 103.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 103.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 103.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 103.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 103.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 103.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 102.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 102.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 101.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 101.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 101.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 101.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 100.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 100.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 99.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 99.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 99.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 99.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 99.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 99.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 98.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 98.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 98.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 98.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 98.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 98.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 98.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 97.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 97.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 97.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 97.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 97.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 97.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 97.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 96.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 96.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 96.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 96.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 95.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 95.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 95.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 95.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 94.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 94.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 94.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 94.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 94.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 94.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 93.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 93.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 93.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 93.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 93.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 92.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 92.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 92.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 92.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 92.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 92.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 92.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 92.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 92.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 92.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 91.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 91.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 91.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 90.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 90.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 90.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 89.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 89.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 89.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 89.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 89.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 89.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 88.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 88.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 88.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 87.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 87.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 87.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 87.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 86.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 86.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 86.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 85.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 85.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 85.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 85.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 84.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 83.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 83.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 83.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 83.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 82.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 82.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 82.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 82.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 82.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 82.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 80.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 80.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 80.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 79.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 79.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 79.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 79.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 78.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 78.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 77.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 77.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 76.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 75.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 74.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 74.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 73.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 73.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 69.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 68.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 63.3
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 107.4
FF:10164-103B2 76 years, female 107.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.0
Pig sample Sample description nTPM
Caudate
nTPM: 45.9
Samples: 4

Max nTPM: 53.0
Min nTPM: 37.1
Sample A Female 37.1
Sample B Female 51.7
Sample C Male 53.0
Sample D Male 41.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo