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  • SUMMARY

  • TISSUE

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  • RTN3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:278.9 nTPM
FANTOM5:429.6 Scaled Tags Per Million
Pig:423.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA015649Antibody HPA015650
Glial cells Not detectedMedium
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 278.9
Samples: 300

Max nTPM: 828.3
Min nTPM: 84.9
Std nTPM: 94.8
Median nTPM: 278.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 828.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 752.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 586.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 520.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 510.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 483.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 465.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 456.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 450.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 444.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 435.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 433.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 427.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 424.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 413.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 413.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 410.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 409.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 405.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 402.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 401.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 396.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 393.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 391.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 386.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 385.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 384.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 381.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 380.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 380.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 379.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 379.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 378.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 377.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 376.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 375.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 373.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 373.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 373.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 372.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 371.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 370.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 368.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 367.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 365.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 364.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 363.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 360.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 359.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 358.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 356.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 354.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 354.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 354.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 353.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 353.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 353.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 352.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 352.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 352.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 352.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 350.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 347.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 346.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 346.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 345.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 345.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 344.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 344.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 343.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 343.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 343.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 343.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 343.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 342.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 342.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 341.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 340.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 338.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 336.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 334.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 334.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 334.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 333.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 333.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 331.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 330.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 330.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 330.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 329.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 329.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 328.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 327.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 327.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 327.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 327.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 326.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 324.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 322.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 319.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 318.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 317.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 317.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 317.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 314.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 313.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 313.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 309.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 308.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 307.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 306.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 305.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 305.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 304.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 303.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 303.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 303.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 302.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 302.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 302.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 301.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 299.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 297.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 297.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 296.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 295.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 295.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 295.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 295.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 293.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 292.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 292.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 291.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 290.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 289.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 289.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 289.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 288.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 287.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 286.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 284.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 284.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 283.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 283.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 281.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 280.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 280.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 279.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 278.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 278.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 278.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 277.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 277.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 276.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 276.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 274.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 273.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 273.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 272.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 272.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 272.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 271.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 269.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 268.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 266.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 266.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 265.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 265.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 263.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 262.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 262.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 261.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 260.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 259.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 254.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 254.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 254.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 254.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 253.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 251.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 251.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 251.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 249.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 248.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 248.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 246.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 245.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 244.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 243.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 243.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 241.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 238.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 238.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 237.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 237.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 237.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 237.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 237.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 232.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 232.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 230.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 229.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 228.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 227.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 226.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 225.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 223.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 220.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 218.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 217.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 217.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 216.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 215.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 215.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 214.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 213.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 212.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 211.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 210.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 209.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 209.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 209.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 206.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 206.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 205.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 204.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 204.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 203.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 202.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 202.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 202.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 201.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 201.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 199.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 198.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 198.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 195.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 194.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 193.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 190.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 190.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 190.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 189.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 186.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 185.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 183.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 183.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 183.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 181.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 180.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 180.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 179.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 179.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 179.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 179.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 178.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 177.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 176.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 176.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 176.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 175.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 175.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 174.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 174.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 173.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 172.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 171.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 170.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 168.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 165.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 163.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 161.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 160.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 159.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 158.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 158.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 158.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 157.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 157.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 155.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 155.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 153.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 153.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 152.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 152.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 146.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 144.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 142.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 140.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 136.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 136.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 136.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 136.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 132.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 125.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 109.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 109.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 106.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 105.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 84.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

429.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 429.6
FF:10164-103B2 76 years, female 429.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

423.0
Pig sample Sample description nTPM
Caudate
nTPM: 423.0
Samples: 4

Max nTPM: 487.8
Min nTPM: 382.5
Sample A Female 398.6
Sample B Female 423.1
Sample C Male 487.8
Sample D Male 382.5

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