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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • AGAP3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:118.7 nTPM
FANTOM5:114.1 Scaled Tags Per Million
Pig:93.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA012883
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 118.7
Samples: 300

Max nTPM: 212.4
Min nTPM: 41.8
Std nTPM: 31.4
Median nTPM: 117.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 212.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 207.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 207.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 206.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 196.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 192.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 189.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 189.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 178.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 176.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 175.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 174.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 173.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 173.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 172.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 170.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 170.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 168.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 168.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 168.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 165.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 163.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 162.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 162.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 161.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 161.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 159.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 159.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 159.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 159.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 155.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 155.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 155.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 154.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 153.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 153.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 152.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 151.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 150.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 149.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 149.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 149.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 149.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 148.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 148.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 148.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 148.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 148.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 147.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 147.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 147.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 147.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 146.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 146.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 145.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 145.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 145.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 145.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 144.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 144.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 144.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 144.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 143.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 143.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 142.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 142.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 142.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 141.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 141.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 141.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 140.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 140.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 140.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 140.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 139.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 139.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 139.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 139.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 138.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 138.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 138.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 137.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 137.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 137.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 137.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 137.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 137.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 137.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 137.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 137.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 136.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 135.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 135.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 135.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 135.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 135.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 134.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 134.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 133.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 133.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 132.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 132.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 131.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 131.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 131.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 131.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 130.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 130.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 130.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 129.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 129.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 128.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 128.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 128.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 128.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 128.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 127.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 127.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 126.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 126.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 126.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 125.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 125.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 124.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 123.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 123.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 123.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 123.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 122.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 122.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 122.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 122.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 122.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 121.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 121.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 121.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 121.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 120.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 120.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 120.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 120.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 119.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 119.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 119.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 119.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 117.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 117.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 117.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 117.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 117.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 116.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 116.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 116.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 116.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 115.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 115.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 114.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 113.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 113.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 113.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 113.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 113.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 112.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 112.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 112.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 112.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 112.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 111.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 111.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 111.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 111.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 111.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 111.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 111.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 111.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 111.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 111.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 110.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 110.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 110.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 110.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 110.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 110.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 110.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 109.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 109.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 109.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 108.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 108.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 108.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 107.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 106.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 106.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 106.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 106.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 105.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 105.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 105.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 105.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 104.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 104.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 104.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 104.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 104.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 104.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 104.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 104.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 103.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 103.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 102.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 102.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 101.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 101.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 100.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 100.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 100.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 100.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 100.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 99.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 99.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 99.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 99.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 99.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 99.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 98.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 98.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 97.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 97.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 97.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 97.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 97.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 96.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 95.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 95.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 95.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 93.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 92.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 92.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 91.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 91.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 90.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 90.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 88.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 88.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 88.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 87.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 87.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 86.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 86.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 86.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 86.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 85.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 85.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 84.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 83.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 83.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 83.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 82.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 80.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 80.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 79.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 79.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 79.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 77.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 77.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 77.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 77.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 77.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 76.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 76.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 74.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 74.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 74.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 72.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 72.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 72.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 72.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 72.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 71.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 69.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 69.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 69.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 67.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 67.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 63.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 61.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 60.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 59.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 58.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 58.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 57.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 57.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 56.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 55.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 49.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 42.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 41.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.1
FF:10164-103B2 76 years, female 114.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.5
Pig sample Sample description nTPM
Caudate
nTPM: 93.5
Samples: 4

Max nTPM: 109.7
Min nTPM: 72.7
Sample A Female 72.7
Sample B Female 108.9
Sample C Male 109.7
Sample D Male 82.8

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