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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • CD63
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:358.4 nTPM
FANTOM5:128.9 Scaled Tags Per Million
Pig:56.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA010088Antibody CAB026356
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 358.4
Samples: 300

Max nTPM: 1565.6
Min nTPM: 125.9
Std nTPM: 162.0
Median nTPM: 325.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1565.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1233.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1168.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1040.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 747.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 747.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 697.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 666.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 664.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 649.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 648.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 641.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 592.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 591.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 586.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 580.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 571.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 567.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 560.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 559.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 550.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 549.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 545.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 545.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 538.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 536.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 535.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 526.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 523.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 520.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 519.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 516.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 511.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 509.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 509.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 505.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 501.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 501.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 499.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 495.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 495.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 493.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 492.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 487.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 486.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 485.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 485.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 484.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 483.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 480.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 480.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 475.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 474.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 473.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 472.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 472.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 469.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 469.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 469.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 468.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 468.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 466.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 464.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 463.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 462.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 460.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 456.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 453.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 453.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 441.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 441.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 441.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 439.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 435.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 435.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 434.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 433.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 431.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 423.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 422.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 421.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 420.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 417.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 416.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 413.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 413.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 412.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 411.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 411.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 410.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 410.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 410.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 408.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 408.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 407.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 407.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 406.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 406.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 405.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 403.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 403.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 402.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 401.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 400.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 399.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 398.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 396.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 396.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 391.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 389.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 389.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 389.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 387.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 384.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 382.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 380.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 378.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 373.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 373.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 373.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 372.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 370.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 367.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 366.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 363.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 359.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 359.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 356.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 353.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 352.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 352.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 351.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 350.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 348.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 346.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 346.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 343.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 342.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 342.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 342.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 340.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 337.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 333.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 333.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 331.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 331.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 327.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 327.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 326.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 325.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 325.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 324.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 324.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 323.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 323.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 323.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 320.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 319.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 319.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 319.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 318.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 318.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 317.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 316.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 315.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 314.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 313.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 313.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 312.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 311.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 308.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 307.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 305.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 304.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 303.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 296.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 295.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 293.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 293.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 292.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 288.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 287.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 286.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 285.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 284.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 284.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 284.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 283.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 282.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 282.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 282.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 280.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 280.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 278.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 277.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 275.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 275.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 274.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 273.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 272.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 272.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 270.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 270.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 268.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 268.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 268.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 267.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 267.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 266.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 266.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 265.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 265.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 265.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 265.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 264.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 263.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 263.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 261.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 258.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 258.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 258.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 258.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 256.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 255.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 253.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 253.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 253.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 252.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 252.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 252.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 251.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 251.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 248.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 246.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 243.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 241.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 239.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 236.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 232.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 231.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 231.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 230.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 229.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 228.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 227.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 227.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 226.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 222.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 221.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 220.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 220.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 220.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 220.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 219.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 218.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 217.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 217.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 217.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 216.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 216.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 215.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 213.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 212.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 209.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 208.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 207.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 207.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 206.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 203.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 203.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 201.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 199.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 199.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 197.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 196.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 194.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 193.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 192.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 190.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 190.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 189.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 189.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 187.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 181.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 181.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 180.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 175.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 173.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 172.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 169.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 169.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 165.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 165.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 159.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 158.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 141.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 140.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 137.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 133.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 125.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 128.9
FF:10164-103B2 76 years, female 128.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.6
Pig sample Sample description nTPM
Caudate
nTPM: 56.6
Samples: 4

Max nTPM: 61.6
Min nTPM: 47.7
Sample A Female 55.5
Sample B Female 61.4
Sample C Male 61.6
Sample D Male 47.7

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