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FAIM2
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  • TISSUE

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  • FAIM2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:201.4 nTPM
FANTOM5:441.5 Scaled Tags Per Million
Pig:388.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018790Antibody HPA048800
Glial cells MediumNot detected
Neuronal cells Not detectedMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 201.4
Samples: 300

Max nTPM: 376.6
Min nTPM: 40.6
Std nTPM: 63.9
Median nTPM: 200.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 376.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 359.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 358.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 357.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 331.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 327.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 326.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 325.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 324.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 323.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 323.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 317.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 313.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 313.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 312.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 309.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 305.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 303.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 302.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 302.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 302.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 301.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 299.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 299.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 297.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 296.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 296.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 293.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 292.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 290.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 288.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 287.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 284.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 284.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 281.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 281.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 280.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 278.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 278.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 275.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 275.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 272.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 271.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 271.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 271.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 270.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 269.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 269.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 267.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 267.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 267.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 267.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 265.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 264.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 262.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 261.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 260.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 260.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 259.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 259.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 259.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 258.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 258.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 258.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 257.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 257.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 256.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 255.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 252.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 252.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 250.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 250.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 250.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 250.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 247.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 246.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 245.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 245.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 244.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 243.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 243.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 242.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 241.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 240.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 240.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 239.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 237.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 237.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 236.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 236.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 236.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 235.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 235.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 234.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 234.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 233.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 233.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 230.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 228.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 227.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 226.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 226.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 225.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 224.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 224.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 223.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 223.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 222.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 222.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 222.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 222.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 222.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 221.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 221.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 221.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 221.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 221.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 221.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 220.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 219.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 219.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 218.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 218.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 217.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 217.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 217.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 217.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 214.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 212.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 212.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 211.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 209.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 208.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 208.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 208.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 208.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 207.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 207.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 206.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 206.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 206.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 204.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 203.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 203.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 202.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 201.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 201.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 200.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 200.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 200.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 199.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 199.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 198.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 196.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 196.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 195.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 195.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 194.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 194.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 191.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 191.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 191.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 191.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 190.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 190.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 189.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 189.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 187.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 187.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 186.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 185.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 185.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 184.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 182.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 181.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 181.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 181.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 180.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 180.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 180.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 180.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 180.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 179.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 179.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 178.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 178.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 178.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 177.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 177.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 175.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 175.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 174.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 172.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 171.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 170.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 170.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 169.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 169.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 168.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 166.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 166.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 165.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 165.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 165.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 163.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 162.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 162.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 162.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 162.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 162.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 162.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 161.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 160.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 159.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 159.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 159.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 159.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 159.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 158.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 156.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 156.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 155.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 154.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 154.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 154.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 153.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 153.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 150.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 149.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 149.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 148.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 147.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 147.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 147.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 146.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 145.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 145.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 143.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 143.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 143.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 142.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 142.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 140.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 140.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 139.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 139.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 138.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 135.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 134.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 133.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 132.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 132.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 131.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 131.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 131.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 130.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 129.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 126.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 122.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 121.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 120.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 120.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 119.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 119.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 119.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 119.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 119.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 118.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 118.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 118.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 117.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 116.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 116.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 116.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 114.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 113.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 112.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 111.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 111.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 110.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 110.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 109.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 108.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 107.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 104.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 103.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 103.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 102.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 99.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 97.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 96.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 95.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 95.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 92.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 90.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 80.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 70.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 61.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 40.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

441.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 441.5
FF:10164-103B2 76 years, female 441.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.8
Pig sample Sample description nTPM
Caudate
nTPM: 388.8
Samples: 4

Max nTPM: 462.5
Min nTPM: 300.5
Sample A Female 300.5
Sample B Female 438.4
Sample C Male 462.5
Sample D Male 353.9

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