We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TMBIM1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TMBIM1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:93.7 nTPM
FANTOM5:264.8 Scaled Tags Per Million
Pig:24.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA012093
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 93.7
Samples: 300

Max nTPM: 468.5
Min nTPM: 17.2
Std nTPM: 65.1
Median nTPM: 73.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 468.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 394.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 353.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 351.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 345.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 327.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 297.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 287.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 285.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 267.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 259.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 249.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 248.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 232.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 227.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 225.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 218.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 214.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 200.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 195.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 192.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 189.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 186.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 186.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 186.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 184.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 175.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 174.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 172.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 171.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 166.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 162.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 160.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 159.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 159.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 158.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 156.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 155.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 154.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 151.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 149.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 148.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 147.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 146.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 145.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 143.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 143.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 142.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 141.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 138.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 138.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 137.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 136.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 135.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 133.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 133.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 127.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 126.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 124.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 124.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 123.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 123.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 120.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 120.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 119.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 118.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 113.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 113.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 112.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 112.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 110.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 110.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 110.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 109.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 108.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 108.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 108.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 107.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 106.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 105.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 104.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 104.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 104.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 104.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 103.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 103.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 103.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 103.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 103.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 103.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 102.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 101.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 101.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 100.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 99.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 99.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 99.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 99.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 99.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 98.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 97.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 97.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 96.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 95.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 93.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 91.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 90.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 89.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 89.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 88.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 87.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 86.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 86.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 86.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 85.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 84.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 83.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 83.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 82.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 82.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 81.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 81.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 81.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 80.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 80.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 80.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 80.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 80.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 79.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 79.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 79.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 79.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 78.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 78.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 77.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 77.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 77.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 76.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 76.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 76.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 75.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 75.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 75.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 75.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 75.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 75.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 75.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 73.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 73.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 73.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 73.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 73.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 72.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 72.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 72.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 71.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 71.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 71.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 71.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 71.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 71.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 71.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 71.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 70.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 70.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 70.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 70.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 69.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 69.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 69.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 68.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 68.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 68.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 68.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 67.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 67.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 67.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 67.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 67.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 66.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 66.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 66.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 65.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 65.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 65.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 64.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 63.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 63.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 63.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 62.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 62.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 62.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 62.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 61.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 61.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 61.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 60.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 60.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 59.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 59.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 59.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 58.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 58.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 58.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 57.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 56.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 56.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 56.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 56.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 55.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 55.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 55.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 54.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 54.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 54.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 54.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 54.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 54.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 53.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 53.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 53.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 53.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 53.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 53.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 53.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 52.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 52.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 52.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 51.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 51.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 51.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 51.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 50.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 50.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 50.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 49.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 49.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 49.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 49.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 49.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 49.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 49.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 48.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 48.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 48.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 47.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 47.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 47.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 47.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 46.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 45.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 45.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 44.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 44.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 44.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 44.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 44.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 44.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 43.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 43.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 43.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 42.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 42.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 42.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 42.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 42.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 41.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 41.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 41.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 40.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 39.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 39.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 38.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 38.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 37.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 37.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 37.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 36.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 36.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 36.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 36.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 35.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 34.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 33.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 33.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 33.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 33.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 32.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 32.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 30.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 29.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 29.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 26.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 24.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 23.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 20.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 17.2
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 264.8
FF:10164-103B2 76 years, female 264.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.9
Pig sample Sample description nTPM
Caudate
nTPM: 24.9
Samples: 4

Max nTPM: 26.3
Min nTPM: 23.6
Sample A Female 23.6
Sample B Female 26.3
Sample C Male 25.8
Sample D Male 23.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo