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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CCM2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:124.4 nTPM
FANTOM5:71.8 Scaled Tags Per Million
Pig:49.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA020273Antibody HPA021669
Glial cells LowLow
Neuronal cells LowLow



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 124.4
Samples: 300

Max nTPM: 282.6
Min nTPM: 30.3
Std nTPM: 46.1
Median nTPM: 120.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 282.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 255.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 247.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 242.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 235.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 235.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 233.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 231.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 224.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 218.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 217.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 209.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 209.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 207.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 205.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 204.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 202.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 202.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 201.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 199.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 197.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 197.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 197.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 196.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 191.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 190.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 188.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 188.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 187.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 187.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 187.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 187.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 187.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 186.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 185.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 184.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 183.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 182.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 180.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 180.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 178.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 177.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 177.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 177.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 176.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 176.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 176.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 175.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 174.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 173.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 171.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 169.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 169.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 168.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 168.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 167.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 166.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 166.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 166.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 165.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 164.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 161.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 159.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 158.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 157.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 156.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 156.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 156.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 156.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 154.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 154.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 154.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 154.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 151.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 151.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 150.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 149.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 149.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 149.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 148.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 146.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 146.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 146.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 146.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 146.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 146.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 145.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 145.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 144.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 144.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 144.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 142.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 141.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 141.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 141.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 141.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 141.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 140.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 140.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 139.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 138.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 138.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 138.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 138.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 137.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 137.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 136.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 136.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 136.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 135.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 135.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 134.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 134.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 133.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 133.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 133.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 132.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 132.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 131.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 131.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 131.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 131.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 131.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 131.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 130.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 130.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 129.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 129.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 129.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 129.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 129.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 129.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 128.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 127.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 127.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 125.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 125.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 124.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 124.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 124.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 124.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 123.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 122.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 122.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 122.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 121.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 121.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 121.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 121.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 121.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 120.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 120.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 120.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 120.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 120.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 120.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 119.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 119.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 119.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 119.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 118.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 118.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 117.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 117.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 117.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 117.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 116.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 116.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 115.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 114.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 114.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 113.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 113.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 112.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 112.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 112.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 111.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 111.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 110.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 110.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 110.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 110.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 109.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 109.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 109.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 108.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 107.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 107.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 107.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 107.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 106.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 106.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 106.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 106.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 105.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 104.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 104.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 104.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 103.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 103.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 103.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 101.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 100.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 100.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 98.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 98.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 96.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 96.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 95.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 95.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 94.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 94.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 93.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 93.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 93.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 92.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 92.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 92.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 91.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 91.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 91.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 90.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 90.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 89.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 88.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 88.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 88.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 87.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 87.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 87.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 87.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 86.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 86.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 85.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 84.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 84.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 84.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 84.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 83.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 83.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 82.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 82.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 82.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 82.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 82.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 81.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 80.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 79.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 79.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 78.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 78.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 77.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 77.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 76.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 76.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 74.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 74.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 73.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 73.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 73.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 72.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 72.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 71.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 70.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 70.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 70.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 69.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 69.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 69.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 67.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 67.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 66.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 66.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 65.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 63.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 63.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 63.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 62.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 61.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 60.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 57.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 57.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 57.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 57.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 56.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 56.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 54.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 53.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 53.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 51.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 51.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 50.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 50.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 49.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 46.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 41.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 39.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 36.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 36.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 30.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.8
FF:10164-103B2 76 years, female 71.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.2
Pig sample Sample description nTPM
Caudate
nTPM: 49.2
Samples: 4

Max nTPM: 67.0
Min nTPM: 27.8
Sample A Female 27.8
Sample B Female 53.6
Sample C Male 67.0
Sample D Male 48.3

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