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SLC2A8
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SLC2A8
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:17.3 nTPM
FANTOM5:25.8 Scaled Tags Per Million
Pig:6.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA011935
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.3
Samples: 300

Max nTPM: 44.5
Min nTPM: 8.4
Std nTPM: 3.9
Median nTPM: 16.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 44.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 35.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 31.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 31.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 29.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 29.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 29.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 29.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 26.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 26.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 25.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 24.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 24.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 24.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 24.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 23.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 23.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 23.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 23.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 22.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 22.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 22.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 22.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 22.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 22.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 21.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 21.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 21.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 21.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 21.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 21.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 21.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 21.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 21.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 21.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 21.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 21.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 21.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 21.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 20.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 20.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 20.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 20.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 20.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 20.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 20.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 20.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 20.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 20.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 20.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 20.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 20.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 20.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 20.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 20.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 19.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 19.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 19.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 19.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 19.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 19.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 19.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 19.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 19.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 19.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 19.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 19.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 19.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 19.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 19.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 19.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 19.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 18.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 18.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 18.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 18.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 18.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 18.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 18.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 18.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 18.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 18.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 18.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 18.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 18.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 18.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 18.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 18.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 18.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 18.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 18.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 18.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 18.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 18.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 18.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 18.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 17.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 17.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 17.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 17.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 17.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 17.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 17.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 17.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 17.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 17.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 17.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 17.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 17.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 17.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 17.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 17.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 17.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 17.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 17.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 17.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 17.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 17.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 17.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 17.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 17.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 17.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 17.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 17.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 17.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 17.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 17.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 17.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 17.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 17.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 17.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 17.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 17.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 17.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 17.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 17.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 17.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 17.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 16.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 16.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 16.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 16.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 16.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 16.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 16.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 16.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 16.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 16.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 16.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 16.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 16.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 16.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 16.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 16.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 16.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 16.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 16.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 16.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 16.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 16.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 16.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 16.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 16.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 16.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 16.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 16.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 16.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 16.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 16.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 16.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 16.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 16.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 16.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 16.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 16.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 16.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 16.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 16.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 16.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 16.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 16.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 16.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 16.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 16.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 16.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 16.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 16.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 15.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 15.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 15.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 15.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 15.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 15.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 15.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 15.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 15.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 15.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 15.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 15.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 15.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 15.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 15.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 15.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 15.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 15.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 15.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 15.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 15.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 15.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 15.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 15.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 15.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 15.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 15.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 15.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 15.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 15.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 15.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 15.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 15.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 15.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 15.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 15.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 15.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 15.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 15.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 15.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 14.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 14.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 14.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 14.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 14.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 14.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 14.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 14.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 14.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 14.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 14.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 14.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 14.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 14.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 14.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 14.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 14.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 14.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 14.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 14.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 14.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 14.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 14.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 14.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 14.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 14.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 14.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 14.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 14.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 14.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 14.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 13.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 13.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 13.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 13.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 13.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 13.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 13.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 13.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 13.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 13.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 13.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 13.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 13.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 13.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 13.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 13.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 13.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 13.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 13.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 13.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 13.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 13.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 12.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 12.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 12.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 12.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 12.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 12.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 12.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 12.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 12.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 12.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 12.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 12.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 12.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 11.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 11.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 11.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 11.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 9.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 8.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.8
FF:10164-103B2 76 years, female 25.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.7
Pig sample Sample description nTPM
Caudate
nTPM: 6.7
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.9
Sample A Female 6.5
Sample B Female 7.3
Sample C Male 5.9
Sample D Male 7.2

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