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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:52.7 nTPM
FANTOM5:76.3 Scaled Tags Per Million
Pig:19.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA017065
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.7
Samples: 300

Max nTPM: 162.0
Min nTPM: 21.8
Std nTPM: 18.7
Median nTPM: 49.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 162.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 117.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 114.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 113.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 109.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 99.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 96.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 94.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 93.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 92.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 92.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 91.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 90.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 89.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 89.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 88.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 87.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 86.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 85.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 85.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 82.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 82.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 82.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 81.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 80.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 79.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 78.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 78.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 78.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 77.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 77.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 77.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 77.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 77.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 77.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 77.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 77.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 75.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 75.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 75.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 73.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 72.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 71.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 71.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 71.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 70.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 70.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 70.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 70.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 69.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 68.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 68.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 68.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 68.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 66.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 66.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 66.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 64.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 64.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 64.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 63.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 63.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 63.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 63.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 63.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 62.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 62.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 62.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 62.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 62.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 61.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 61.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 61.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 61.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 61.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 61.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 61.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 61.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 61.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 60.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 60.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 60.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 60.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 60.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 59.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 59.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 58.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 58.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 58.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 58.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 58.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 57.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 57.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 57.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 57.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 57.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 57.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 57.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 56.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 56.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 56.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 56.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 56.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 56.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 56.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 56.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 55.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 55.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 55.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 55.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 54.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 54.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 54.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 54.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 54.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 54.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 54.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 53.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 53.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 53.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 53.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 53.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 53.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 52.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 52.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 52.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 52.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 52.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 52.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 51.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 51.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 51.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 51.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 51.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 51.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 51.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 50.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 50.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 50.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 50.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 50.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 50.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 50.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 50.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 49.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 49.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 49.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 49.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 49.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 49.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 49.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 48.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 48.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 48.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 48.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 48.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 48.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 47.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 47.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 47.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 47.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 47.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 47.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 47.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 46.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 46.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 46.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 46.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 45.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 45.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 45.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 45.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 45.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 45.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 45.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 45.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 44.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 44.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 44.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 44.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 44.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 44.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 44.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 43.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 43.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 43.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 43.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 43.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 43.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 43.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 43.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 42.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 42.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 42.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 42.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 42.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 42.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 41.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 41.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 41.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 41.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 41.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 41.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 41.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 41.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 40.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 40.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 40.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 40.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 40.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 40.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 40.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 40.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 40.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 40.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 40.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 40.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 40.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 39.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 39.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 39.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 39.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 39.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 39.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 38.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 38.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 38.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 38.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 38.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 38.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 38.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 38.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 38.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 38.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 37.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 37.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 37.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 37.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 37.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 37.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 37.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 37.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 37.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 37.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 36.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 36.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 36.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 36.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 36.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 36.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 36.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 36.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 36.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 35.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 35.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 35.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 35.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 35.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 34.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 34.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 34.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 34.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 34.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 34.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 33.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 33.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 33.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 33.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 32.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 32.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 32.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 32.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 32.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 32.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 32.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 32.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 31.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 31.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 31.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 31.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 31.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 29.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 29.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 29.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 29.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 29.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 29.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 28.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 28.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 27.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 27.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 27.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 27.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 26.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 26.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 25.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 25.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 21.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

76.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 76.3
FF:10164-103B2 76 years, female 76.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.6
Pig sample Sample description nTPM
Caudate
nTPM: 19.6
Samples: 4

Max nTPM: 24.4
Min nTPM: 16.6
Sample A Female 24.4
Sample B Female 16.6
Sample C Male 19.8
Sample D Male 17.5

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