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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
High
Inner nuclear layer:
High
Inner plexiform layer:
High
Limiting membrane:
High
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA036292
Photoreceptor cells
High
Limiting membrane
High
Outer plexiform layer
High
Inner nuclear layer
High
Inner plexiform layer
High
Ganglion cells
High
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.3
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 89.3
Samples: 105
Max nTPM: 130.3
Min nTPM: 51.1
Std nTPM: 15.0
Median nTPM:
35_1
74 years, female
130.3
375_1
74 years, female
124.7
316_1
62 years, male
120.8
490_1
67 years, female
115.5
415_1
77 years, female
114.1
6_1
73 years, female
113.4
81_1
67 years, male
112.5
217_1
76 years, male
111.2
126_1
63 years, male
110.7
389_1
86 years, female
109.4
237_1
82 years, male
109.3
229_1
69 years, female
108.8
386_1
76 years, male
106.7
162_1
79 years, female
105.8
324_1
76 years, male
105.6
246_1
77 years, male
104.7
322_1
76 years, male
104.6
518_1
75 years, female
103.2
405_1
91 years, male
103.1
117_1
61 years, male
102.2
266_1
85 years, male
102.2
466_1
57 years, female
101.7
218_1
71 years, female
100.2
414_1
84 years, female
100.2
425_1
59 years, female
100.2
377_1
82 years, female
99.8
153_1
70 years, female
99.4
447_1
81 years, male
99.2
379_1
60 years, male
98.6
43_1
64 years, female
98.5
243_1
75 years, male
97.6
347_1
72 years, male
97.0
142_1
61 years, female
96.7
17_1
71 years, male
96.4
491_1
89 years, female
95.7
32_1
67 years, male
95.3
321_1
62 years, female
94.7
9_1
66 years, female
94.4
468_1
89 years, male
93.4
355_1
70 years, female
92.7
307_1
66 years, female
92.3
265_1
87 years, male
92.2
352_1
62 years, male
91.8
384_1
83 years, male
91.6
18_1
88 years, male
91.0
499_1
55 years, female
90.3
526_1
61 years, male
89.9
404_1
82 years, female
89.8
319_1
81 years, male
89.7
376_1
75 years, female
89.4
480_1
63 years, male
89.3
145_1
84 years, male
88.4
495_1
57 years, female
88.2
335_1
73 years, female
88.1
396_1
62 years, male
88.1
99_1
64 years, male
87.8
313_1
79 years, female
87.8
320_1
89 years, female
87.6
119_1
70 years, female
87.5
286_1
68 years, female
87.2
42_1
85 years, male
86.8
311_1
78 years, male
86.7
350_1
84 years, female
86.6
354_1
81 years, female
86.2
406_1
79 years, male
85.8
292_1
71 years, male
85.7
137_1
83 years, male
84.5
413_1
59 years, female
84.5
139_1
64 years, female
84.3
172_1
72 years, female
84.2
115_1
83 years, male
84.0
348_1
84 years, male
83.5
189_1
76 years, male
83.2
2_1
77 years, female
82.9
394_1
75 years, female
82.4
293_1
68 years, female
81.7
318_1
68 years, male
81.4
120_1
70 years, female
81.3
173_1
67 years, male
80.2
149_1
88 years, male
80.0
315_1
62 years, female
79.6
254_1
77 years, female
77.8
349_1
83 years, male
77.7
163_1
78 years, male
77.6
517_1
88 years, male
77.6
251_1
78 years, male
77.2
353_1
82 years, female
76.1
4_1
88 years, female
74.9
503_1
68 years, male
73.9
177_1
74 years, male
73.6
109_1
81 years, female
73.0
89_1
63 years, male
71.9
501_1
88 years, male
70.7
356_1
87 years, female
70.2
288_1
66 years, female
70.1
291_1
76 years, male
68.5
41_1
94 years, female
67.6
314_1
67 years, male
64.3
506_1
65 years, male
64.0
264_1
73 years, female
63.5
317_1
60 years, male
62.3
351_1
91 years, male
60.0
452_1
88 years, female
58.4
295_1
61 years, female
56.5
308_1
70 years, female
51.1
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
