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GABARAPL1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GABARAPL1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:192.3 nTPM
FANTOM5:309.2 Scaled Tags Per Million
Pig:355.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051386
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 192.3
Samples: 300

Max nTPM: 540.0
Min nTPM: 56.4
Std nTPM: 97.1
Median nTPM: 171.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 540.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 451.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 438.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 432.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 423.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 420.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 415.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 408.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 407.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 407.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 403.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 384.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 376.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 374.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 368.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 367.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 367.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 366.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 365.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 362.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 361.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 361.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 360.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 358.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 356.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 352.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 352.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 351.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 349.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 349.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 347.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 344.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 341.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 341.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 339.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 338.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 336.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 335.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 333.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 327.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 323.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 317.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 317.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 316.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 316.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 312.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 309.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 304.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 300.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 296.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 296.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 293.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 293.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 293.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 289.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 289.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 282.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 281.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 280.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 280.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 280.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 274.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 268.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 267.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 267.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 266.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 265.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 263.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 262.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 261.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 261.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 261.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 260.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 260.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 260.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 259.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 258.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 257.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 255.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 254.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 249.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 247.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 246.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 244.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 242.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 241.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 239.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 234.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 233.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 232.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 231.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 230.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 229.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 229.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 228.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 225.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 223.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 223.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 221.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 220.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 219.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 219.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 215.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 214.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 211.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 211.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 211.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 211.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 210.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 210.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 209.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 209.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 209.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 207.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 207.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 203.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 203.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 202.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 201.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 200.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 195.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 195.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 194.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 194.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 193.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 192.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 189.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 187.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 185.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 185.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 185.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 185.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 184.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 183.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 182.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 182.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 182.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 180.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 180.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 180.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 180.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 178.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 178.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 175.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 175.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 174.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 174.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 173.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 172.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 171.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 171.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 171.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 170.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 169.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 166.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 166.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 165.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 163.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 163.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 158.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 157.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 157.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 157.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 157.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 155.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 154.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 154.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 152.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 151.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 150.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 149.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 147.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 147.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 146.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 144.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 142.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 141.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 141.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 140.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 139.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 139.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 139.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 139.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 139.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 138.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 137.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 136.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 135.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 132.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 132.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 132.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 132.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 132.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 131.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 128.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 127.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 127.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 126.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 126.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 126.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 124.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 124.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 121.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 121.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 121.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 120.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 120.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 120.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 119.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 119.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 118.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 117.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 117.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 116.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 116.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 115.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 114.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 114.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 113.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 113.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 112.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 112.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 111.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 111.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 110.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 109.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 108.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 105.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 105.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 105.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 104.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 103.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 103.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 103.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 103.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 103.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 102.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 102.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 101.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 101.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 100.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 100.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 99.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 99.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 99.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 98.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 98.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 98.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 97.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 97.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 96.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 95.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 95.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 95.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 95.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 94.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 93.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 91.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 91.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 91.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 91.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 91.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 91.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 90.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 90.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 90.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 90.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 90.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 90.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 89.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 89.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 89.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 89.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 88.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 87.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 87.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 87.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 85.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 85.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 85.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 85.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 85.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 84.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 84.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 83.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 82.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 82.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 81.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 81.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 80.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 80.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 76.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 76.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 75.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 71.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 69.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 69.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 67.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 66.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 56.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 309.2
FF:10164-103B2 76 years, female 309.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

355.5
Pig sample Sample description nTPM
Caudate
nTPM: 355.5
Samples: 4

Max nTPM: 434.1
Min nTPM: 310.3
Sample A Female 310.3
Sample B Female 348.3
Sample C Male 434.1
Sample D Male 329.4

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