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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • RTN1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:92.1 nTPM
FANTOM5:521.8 Scaled Tags Per Million
Pig:153.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044249Antibody CAB002745
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 92.1
Samples: 300

Max nTPM: 488.7
Min nTPM: 6.3
Std nTPM: 70.1
Median nTPM: 79.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 488.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 351.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 342.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 305.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 279.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 264.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 261.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 250.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 238.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 237.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 237.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 231.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 225.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 223.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 223.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 222.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 220.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 219.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 217.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 208.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 207.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 205.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 203.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 200.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 197.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 196.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 195.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 195.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 193.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 188.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 188.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 185.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 180.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 179.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 179.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 179.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 174.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 171.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 171.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 171.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 170.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 169.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 168.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 167.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 167.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 163.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 163.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 163.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 162.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 162.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 160.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 158.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 157.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 156.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 154.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 153.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 151.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 148.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 147.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 146.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 144.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 144.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 144.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 143.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 143.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 142.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 139.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 138.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 133.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 133.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 131.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 131.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 129.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 126.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 126.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 124.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 124.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 123.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 123.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 119.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 118.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 118.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 118.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 117.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 117.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 115.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 115.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 114.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 113.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 113.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 113.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 113.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 112.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 112.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 111.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 111.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 110.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 110.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 110.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 110.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 110.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 109.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 108.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 108.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 108.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 108.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 107.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 106.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 105.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 104.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 101.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 101.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 101.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 100.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 99.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 97.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 96.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 96.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 93.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 93.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 93.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 93.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 92.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 92.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 92.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 92.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 92.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 91.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 91.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 91.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 90.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 90.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 90.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 90.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 89.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 87.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 87.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 86.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 86.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 84.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 83.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 83.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 82.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 81.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 81.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 81.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 80.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 80.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 79.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 79.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 79.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 78.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 78.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 76.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 76.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 76.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 75.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 73.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 73.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 69.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 68.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 68.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 68.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 67.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 66.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 66.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 66.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 66.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 65.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 65.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 64.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 64.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 64.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 63.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 63.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 61.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 61.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 60.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 59.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 58.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 55.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 54.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 54.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 54.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 52.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 52.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 52.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 51.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 50.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 50.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 49.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 49.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 47.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 47.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 47.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 47.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 46.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 46.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 45.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 45.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 45.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 45.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 45.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 45.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 43.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 43.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 43.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 41.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 41.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 40.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 40.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 40.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 39.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 39.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 38.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 37.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 36.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 36.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 35.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 35.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 35.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 34.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 34.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 34.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 34.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 33.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 33.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 33.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 33.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 33.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 32.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 31.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 31.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 31.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 31.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 31.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 31.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 31.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 30.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 29.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 29.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 29.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 29.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 28.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 27.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 27.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 27.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 27.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 26.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 26.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 25.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 25.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 25.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 25.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 25.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 25.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 25.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 24.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 23.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 23.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 22.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 22.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 22.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 22.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 22.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 22.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 21.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 20.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 20.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 20.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 20.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 20.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 19.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 18.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 18.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 18.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 17.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 17.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 17.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 17.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 17.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 17.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 16.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 16.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 16.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 16.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 16.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 15.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 14.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 13.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 12.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 12.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 12.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 12.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 12.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 11.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 11.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 6.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

521.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 521.8
FF:10164-103B2 76 years, female 521.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.2
Pig sample Sample description nTPM
Caudate
nTPM: 153.2
Samples: 4

Max nTPM: 167.6
Min nTPM: 134.4
Sample A Female 147.8
Sample B Female 163.1
Sample C Male 167.6
Sample D Male 134.4

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