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  • TISSUE

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  • TSPAN3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:273.2 nTPM
FANTOM5:223.2 Scaled Tags Per Million
Pig:147.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA015996
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

273.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 273.2
Samples: 300

Max nTPM: 449.7
Min nTPM: 165.9
Std nTPM: 47.3
Median nTPM: 267.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 449.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 421.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 412.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 410.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 401.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 398.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 392.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 388.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 372.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 369.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 364.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 363.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 362.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 360.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 354.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 353.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 352.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 351.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 349.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 345.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 344.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 343.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 343.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 342.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 341.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 341.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 339.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 338.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 337.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 337.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 336.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 335.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 334.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 334.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 333.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 332.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 332.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 331.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 331.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 331.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 330.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 329.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 328.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 326.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 325.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 325.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 323.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 323.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 322.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 321.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 320.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 320.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 320.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 320.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 318.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 316.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 312.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 311.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 310.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 310.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 309.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 308.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 307.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 307.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 306.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 306.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 305.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 304.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 304.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 304.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 303.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 303.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 303.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 303.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 301.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 301.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 300.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 300.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 300.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 299.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 299.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 299.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 297.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 297.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 297.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 297.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 297.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 295.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 295.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 293.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 292.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 291.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 291.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 289.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 289.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 289.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 288.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 288.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 287.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 287.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 286.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 286.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 285.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 285.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 284.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 283.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 282.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 282.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 282.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 281.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 281.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 279.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 279.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 279.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 278.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 278.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 278.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 277.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 276.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 275.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 275.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 274.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 274.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 273.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 273.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 273.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 273.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 272.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 272.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 272.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 271.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 271.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 271.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 270.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 270.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 270.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 269.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 269.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 269.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 269.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 269.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 269.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 269.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 268.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 268.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 268.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 268.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 268.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 267.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 267.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 267.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 267.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 267.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 267.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 266.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 266.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 266.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 266.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 266.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 266.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 266.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 265.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 264.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 263.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 263.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 263.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 263.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 262.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 261.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 261.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 260.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 259.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 259.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 258.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 258.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 258.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 258.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 257.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 257.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 256.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 256.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 256.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 255.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 255.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 254.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 254.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 254.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 253.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 253.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 253.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 253.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 253.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 252.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 252.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 252.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 252.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 252.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 252.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 251.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 251.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 251.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 249.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 249.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 248.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 248.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 247.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 247.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 247.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 247.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 247.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 246.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 245.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 245.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 245.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 244.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 243.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 243.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 243.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 242.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 242.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 242.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 242.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 241.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 240.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 240.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 240.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 240.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 240.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 240.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 239.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 239.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 239.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 239.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 239.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 239.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 238.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 237.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 237.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 236.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 236.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 235.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 235.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 235.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 234.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 234.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 233.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 233.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 233.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 232.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 232.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 231.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 230.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 230.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 229.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 229.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 229.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 228.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 228.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 227.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 225.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 225.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 225.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 224.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 223.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 223.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 222.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 222.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 221.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 221.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 221.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 220.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 219.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 218.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 216.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 215.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 215.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 213.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 213.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 212.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 211.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 210.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 209.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 209.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 205.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 203.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 199.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 197.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 197.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 194.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 193.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 190.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 189.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 188.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 188.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 186.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 184.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 183.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 172.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 171.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 165.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

223.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 223.2
FF:10164-103B2 76 years, female 223.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.4
Pig sample Sample description nTPM
Caudate
nTPM: 147.4
Samples: 4

Max nTPM: 161.1
Min nTPM: 136.3
Sample A Female 145.6
Sample B Female 146.5
Sample C Male 161.1
Sample D Male 136.3

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