We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
BBS4
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • BBS4
TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
Tissue methods
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:12.9 nTPM
GTEx:10.1 nTPM
FANTOM5:18.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA039418
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.9
Sample id Sample description nTPM
Hippocampus
nTPM: 12.9
1855 Male, age 76, left hemisphere 14.1
2148 Female, age 91, left hemisphere 13.7
1898 Male, age 80, left hemisphere 13.2
1911 Female, age 85, right hemisphere 13.1
2621 Female, age 67, right hemisphere 12.2
2529 Female, age 94, left hemisphere 11.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.1
Samples: 255

Max nTPM: 15.3
Min nTPM: 3.2
Std nTPM: 1.8
Median nTPM: 10.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 15.3
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 15.2
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 14.7
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 14.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 14.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 13.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 13.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 13.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 13.4
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 13.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 13.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 13.0
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 12.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 12.8
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 12.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 12.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 12.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 12.4
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 12.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 12.4
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 12.4
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 12.3
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 12.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 12.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 12.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 12.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 12.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 12.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 12.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 12.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 12.2
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 12.2
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 12.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 12.1
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 12.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 12.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 12.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 11.9
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 11.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 11.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 11.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 11.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 11.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 11.8
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 11.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 11.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 11.7
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 11.7
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 11.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 11.6
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 11.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 11.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 11.6
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 11.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 11.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 11.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 11.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 11.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 11.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 11.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 11.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 11.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 11.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 11.4
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 11.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 11.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 11.3
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 11.3
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 11.3
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 11.2
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 11.2
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 11.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 11.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 11.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 11.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 11.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 11.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 11.1
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 11.1
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 11.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 11.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 11.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 11.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 11.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 11.0
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 11.0
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 11.0
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 11.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 11.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 10.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 10.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 10.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 10.8
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 10.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 10.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 10.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 10.7
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 10.7
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 10.6
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 10.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 10.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 10.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 10.6
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 10.6
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 10.6
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 10.6
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 10.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 10.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 10.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 10.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 10.5
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 10.5
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 10.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 10.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 10.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 10.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 10.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 10.3
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 10.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 10.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 10.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 10.2
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 10.2
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 10.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 10.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 10.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 10.2
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 10.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 10.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 10.2
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 10.1
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 10.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 10.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 10.1
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 10.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 10.1
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 10.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 10.1
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 10.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 10.0
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 10.0
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 10.0
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 9.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 9.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 9.9
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 9.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 9.8
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 9.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 9.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 9.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 9.8
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 9.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 9.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 9.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 9.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 9.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 9.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 9.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 9.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 9.6
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 9.6
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 9.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 9.5
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 9.5
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 9.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 9.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 9.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 9.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 9.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 9.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 9.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 9.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 9.4
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 9.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 9.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 9.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 9.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 9.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 9.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 9.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 9.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 9.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 9.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 9.0
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 9.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 8.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 8.9
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 8.9
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 8.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 8.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 8.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 8.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 8.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 8.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 8.8
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 8.7
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 8.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 8.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 8.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 8.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 8.6
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 8.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 8.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 8.5
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 8.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 8.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 8.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 8.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 8.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 8.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 8.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 8.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 8.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 8.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 8.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 8.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 8.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 8.1
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 8.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 8.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 8.1
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 8.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 8.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 8.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 7.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 7.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 7.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 7.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 7.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 7.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 7.6
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 7.6
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 7.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 7.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 7.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 7.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 7.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 7.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 7.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 7.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 7.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 7.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 7.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 7.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 7.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 6.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 6.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 6.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 6.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 6.2
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 6.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 5.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 5.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 4.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 3.2
Show allShow less

HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.9
FF:10169-103B7 60 years, female 20.7
FF:10153-102I9 76 years, female 17.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo