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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ARHGDIA
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:184.4 nTPM
FANTOM5:149.9 Scaled Tags Per Million
Pig:106.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA021407Antibody CAB010005
Glial cells Not detectedNot detected
Neuronal cells LowMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 184.4
Samples: 300

Max nTPM: 338.1
Min nTPM: 75.6
Std nTPM: 42.8
Median nTPM: 186.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 338.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 304.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 294.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 289.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 281.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 273.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 272.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 269.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 266.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 264.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 264.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 264.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 263.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 263.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 262.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 257.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 256.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 256.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 251.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 250.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 249.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 248.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 248.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 248.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 247.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 245.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 245.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 244.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 242.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 239.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 239.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 238.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 238.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 238.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 238.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 236.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 236.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 235.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 234.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 233.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 232.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 230.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 230.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 229.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 227.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 226.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 225.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 225.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 225.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 224.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 224.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 223.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 223.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 222.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 222.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 222.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 221.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 221.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 221.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 220.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 220.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 220.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 217.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 217.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 217.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 216.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 216.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 215.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 214.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 214.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 214.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 214.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 213.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 213.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 213.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 212.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 212.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 211.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 211.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 211.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 211.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 211.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 210.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 210.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 210.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 210.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 209.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 209.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 208.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 208.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 207.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 207.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 207.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 206.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 205.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 204.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 202.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 202.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 202.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 202.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 201.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 201.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 200.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 200.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 200.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 199.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 197.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 197.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 197.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 197.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 196.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 196.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 196.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 195.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 195.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 195.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 195.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 194.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 194.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 194.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 193.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 192.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 192.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 192.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 192.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 191.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 191.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 191.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 191.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 190.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 190.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 190.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 190.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 190.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 190.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 189.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 189.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 189.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 189.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 189.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 189.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 188.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 187.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 187.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 187.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 187.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 186.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 186.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 186.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 186.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 186.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 184.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 183.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 183.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 183.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 182.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 182.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 182.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 181.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 180.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 180.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 179.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 179.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 178.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 177.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 177.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 176.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 175.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 175.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 175.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 174.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 174.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 174.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 173.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 172.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 172.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 172.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 171.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 170.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 169.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 168.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 168.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 168.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 167.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 167.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 167.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 166.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 166.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 166.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 165.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 165.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 165.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 164.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 164.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 164.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 163.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 163.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 163.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 162.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 162.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 161.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 161.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 161.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 161.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 161.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 160.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 160.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 158.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 158.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 158.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 157.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 157.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 157.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 156.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 156.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 155.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 155.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 155.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 155.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 154.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 153.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 153.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 153.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 152.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 151.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 151.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 151.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 151.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 151.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 150.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 150.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 150.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 149.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 149.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 149.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 148.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 148.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 148.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 148.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 148.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 147.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 147.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 147.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 147.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 146.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 146.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 145.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 144.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 144.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 144.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 143.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 143.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 143.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 143.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 143.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 142.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 142.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 141.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 141.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 138.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 138.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 138.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 136.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 135.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 133.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 132.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 132.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 131.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 131.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 128.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 128.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 127.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 125.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 125.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 124.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 123.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 123.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 123.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 122.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 122.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 120.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 120.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 118.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 117.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 117.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 116.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 116.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 115.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 114.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 113.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 111.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 110.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 107.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 107.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 104.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 102.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 101.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 98.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 88.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 75.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

149.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 149.9
FF:10164-103B2 76 years, female 149.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.3
Pig sample Sample description nTPM
Caudate
nTPM: 106.3
Samples: 4

Max nTPM: 129.0
Min nTPM: 81.0
Sample A Female 81.0
Sample B Female 119.3
Sample C Male 129.0
Sample D Male 96.0

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