We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CBX8
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CBX8
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1.5 nTPM
FANTOM5:3.0 Scaled Tags Per Million
Pig:7.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA031462
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.5
Samples: 300

Max nTPM: 3.7
Min nTPM: 0.5
Std nTPM: 0.4
Median nTPM: 1.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 3.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 2.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 2.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 2.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 2.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 2.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 2.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 2.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 2.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 2.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 2.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 2.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 2.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 2.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 2.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 2.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 2.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 2.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 2.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 2.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 2.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 0.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 0.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 0.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 0.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 0.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 0.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 0.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 0.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 0.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 0.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 0.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 0.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 0.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 0.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 0.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 0.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 0.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 0.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 0.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 0.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 0.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 0.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 0.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 0.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 0.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 0.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 0.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 0.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 0.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 0.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 0.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 0.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 0.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 0.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 0.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 0.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 0.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 0.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 0.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 0.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 0.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 0.5
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.0
FF:10164-103B2 76 years, female 3.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.3
Pig sample Sample description nTPM
Caudate
nTPM: 7.3
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 7.1
Sample C Male 8.3
Sample D Male 7.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo