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RPS11
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS11
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1534.6 nTPM
FANTOM5:224.9 Scaled Tags Per Million
Pig:206.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049719
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1534.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1534.6
Samples: 300

Max nTPM: 3671.5
Min nTPM: 777.8
Std nTPM: 423.5
Median nTPM: 1446.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 3671.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3467.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2946.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2909.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2899.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2733.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 2645.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2599.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2519.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2488.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2477.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 2332.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2321.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2300.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2286.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2285.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 2278.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2278.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 2249.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 2216.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2175.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 2159.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2135.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 2132.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 2127.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 2125.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2090.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 2072.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 2065.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 2059.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2053.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 2048.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2036.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 2034.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 2019.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2012.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1991.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1989.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1982.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1980.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1967.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1962.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1960.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1956.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1945.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1935.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1920.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1902.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1894.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1890.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1883.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1869.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1867.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1861.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1850.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1846.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1840.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1839.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1832.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1826.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1824.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1811.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1809.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1805.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1804.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1797.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1788.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1788.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1788.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1781.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1781.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1772.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1767.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1763.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1759.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1759.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1757.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1737.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1736.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1730.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1725.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1724.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1722.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1719.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1719.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1705.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1685.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1682.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1666.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1651.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1651.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1649.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1645.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1641.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1639.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1636.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1635.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1626.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1612.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1610.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1605.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1603.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1598.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1598.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1595.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1592.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1591.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1589.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1586.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1586.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1581.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1576.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1574.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1570.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1570.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1570.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1569.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1553.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1552.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1550.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1547.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1542.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1535.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1522.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1521.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1521.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1516.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1515.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1514.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1514.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1509.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1508.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1507.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1487.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1485.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1480.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1479.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1478.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1472.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1467.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1464.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1464.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1463.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1463.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1462.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1460.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1459.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1457.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1454.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1449.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1443.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1440.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1440.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1430.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1430.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1430.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1425.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1421.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1419.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1418.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1417.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1416.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1415.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1413.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1408.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1406.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1406.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1406.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1405.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1404.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1404.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1403.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1403.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1397.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1392.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1391.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1390.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1388.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1388.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1386.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1384.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1381.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1380.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1377.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1375.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1374.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1372.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1369.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1366.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1366.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1365.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1358.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1353.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1352.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1349.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1348.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1344.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1343.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1334.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1332.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1326.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1321.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1321.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1321.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1321.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1320.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1314.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1312.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1308.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1307.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1305.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1304.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1303.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1303.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1299.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1299.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1297.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1286.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1285.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1284.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1282.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1280.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1277.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1276.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1275.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1271.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1270.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1268.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1267.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1264.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1262.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1247.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1231.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1220.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1213.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1209.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1207.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1205.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1202.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1202.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1191.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1188.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1183.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1178.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1178.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1175.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1169.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1168.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1167.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1166.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1162.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1162.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1159.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1156.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1156.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1142.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1136.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1133.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1130.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1128.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1122.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1116.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1116.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1103.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1097.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1095.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1090.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1087.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1082.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1080.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1080.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1076.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1074.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1062.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1062.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1052.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1041.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1035.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1032.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1031.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1026.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1016.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1004.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 999.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 996.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 985.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 950.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 940.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 937.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 935.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 929.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 923.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 922.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 917.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 916.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 905.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 869.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 857.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 808.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 777.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

224.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 224.9
FF:10164-103B2 76 years, female 224.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.3
Pig sample Sample description nTPM
Caudate
nTPM: 206.3
Samples: 4

Max nTPM: 230.9
Min nTPM: 175.0
Sample A Female 206.5
Sample B Female 212.8
Sample C Male 230.9
Sample D Male 175.0

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