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  • TISSUE

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  • PRKACB
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:67.1 nTPM
FANTOM5:323.5 Scaled Tags Per Million
Pig:184.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029754Antibody CAB010363
Glial cells MediumLow
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.1
Samples: 300

Max nTPM: 290.4
Min nTPM: 16.0
Std nTPM: 29.8
Median nTPM: 62.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 290.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 181.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 159.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 150.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 141.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 141.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 140.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 126.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 126.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 125.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 123.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 120.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 120.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 119.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 117.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 116.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 113.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 113.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 113.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 112.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 111.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 110.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 110.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 109.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 108.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 108.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 107.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 106.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 105.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 103.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 103.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 101.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 101.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 101.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 101.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 100.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 100.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 99.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 98.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 98.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 97.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 96.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 96.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 96.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 94.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 93.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 92.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 92.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 92.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 92.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 92.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 91.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 91.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 90.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 90.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 90.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 90.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 90.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 90.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 89.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 89.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 88.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 88.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 87.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 87.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 87.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 86.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 86.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 84.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 83.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 83.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 83.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 83.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 83.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 82.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 82.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 81.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 81.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 81.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 80.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 80.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 79.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 79.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 79.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 79.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 79.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 78.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 77.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 77.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 77.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 76.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 76.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 76.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 76.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 75.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 75.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 75.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 75.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 74.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 74.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 74.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 74.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 74.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 73.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 73.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 73.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 73.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 73.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 73.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 73.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 72.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 72.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 71.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 71.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 70.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 70.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 70.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 70.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 69.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 69.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 69.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 68.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 67.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 67.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 67.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 67.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 67.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 67.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 67.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 66.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 66.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 66.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 65.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 65.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 65.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 65.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 64.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 64.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 64.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 64.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 64.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 64.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 64.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 63.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 63.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 63.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 63.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 62.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 62.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 62.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 62.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 61.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 61.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 61.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 61.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 61.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 60.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 60.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 60.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 60.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 60.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 59.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 59.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 59.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 59.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 59.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 58.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 58.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 58.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 57.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 57.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 57.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 57.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 57.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 56.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 56.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 56.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 55.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 55.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 55.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 55.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 55.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 55.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 54.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 54.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 54.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 54.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 54.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 53.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 53.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 53.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 53.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 53.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 53.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 52.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 52.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 52.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 52.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 51.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 51.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 51.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 51.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 50.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 50.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 50.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 50.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 49.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 49.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 49.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 49.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 48.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 48.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 47.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 47.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 47.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 47.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 47.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 47.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 46.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 46.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 46.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 46.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 45.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 45.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 45.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 44.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 44.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 44.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 44.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 44.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 43.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 43.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 43.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 43.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 42.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 42.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 42.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 42.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 42.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 41.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 41.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 41.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 41.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 41.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 41.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 41.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 41.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 41.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 41.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 40.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 40.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 40.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 40.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 39.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 39.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 39.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 39.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 38.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 38.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 37.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 37.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 37.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 37.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 37.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 36.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 36.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 36.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 36.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 35.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 35.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 35.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 35.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 35.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 35.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 35.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 34.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 34.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 34.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 33.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 33.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 32.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 32.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 32.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 31.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 31.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 31.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 31.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 30.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 30.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 29.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 28.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 26.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 25.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 25.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 25.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 24.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 22.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 20.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 16.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

323.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 323.5
FF:10164-103B2 76 years, female 323.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.7
Pig sample Sample description nTPM
Caudate
nTPM: 184.7
Samples: 4

Max nTPM: 208.4
Min nTPM: 172.7
Sample A Female 208.4
Sample B Female 173.8
Sample C Male 172.7
Sample D Male 183.7

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