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PFDN2
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PFDN2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:138.5 nTPM
FANTOM5:82.5 Scaled Tags Per Million
Pig:19.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA028700
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.5
Samples: 300

Max nTPM: 299.0
Min nTPM: 62.8
Std nTPM: 35.9
Median nTPM: 135.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 299.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 289.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 280.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 274.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 260.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 236.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 234.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 227.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 227.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 209.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 207.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 204.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 204.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 204.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 202.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 199.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 197.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 193.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 191.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 189.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 186.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 181.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 181.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 181.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 179.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 179.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 179.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 178.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 178.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 178.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 177.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 177.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 176.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 176.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 176.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 175.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 175.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 173.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 173.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 172.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 172.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 171.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 171.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 170.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 170.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 170.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 170.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 169.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 169.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 168.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 168.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 167.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 167.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 166.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 165.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 165.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 164.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 163.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 163.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 163.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 162.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 162.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 162.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 161.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 161.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 160.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 160.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 160.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 160.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 160.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 160.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 159.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 159.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 159.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 157.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 157.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 157.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 157.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 156.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 156.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 156.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 155.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 155.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 155.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 154.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 154.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 154.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 153.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 153.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 153.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 152.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 152.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 152.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 152.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 151.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 150.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 150.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 149.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 148.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 148.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 148.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 148.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 148.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 147.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 147.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 146.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 146.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 146.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 145.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 145.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 145.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 144.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 144.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 144.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 144.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 144.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 143.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 143.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 142.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 142.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 142.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 142.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 141.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 141.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 141.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 141.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 141.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 141.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 140.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 140.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 140.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 139.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 139.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 139.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 139.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 138.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 138.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 138.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 138.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 138.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 138.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 138.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 137.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 137.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 137.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 137.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 136.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 136.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 136.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 135.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 135.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 134.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 134.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 134.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 134.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 133.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 133.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 133.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 133.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 133.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 132.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 132.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 132.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 131.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 131.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 131.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 131.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 131.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 130.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 130.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 129.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 129.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 129.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 128.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 128.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 128.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 128.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 128.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 127.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 127.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 127.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 127.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 126.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 126.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 125.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 125.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 125.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 125.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 124.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 124.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 124.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 124.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 123.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 122.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 122.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 122.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 122.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 122.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 121.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 121.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 121.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 121.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 120.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 120.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 120.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 120.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 119.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 119.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 119.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 118.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 118.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 118.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 118.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 118.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 118.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 117.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 117.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 116.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 116.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 115.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 115.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 115.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 115.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 115.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 114.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 114.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 113.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 113.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 113.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 112.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 112.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 111.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 111.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 111.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 110.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 110.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 110.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 109.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 109.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 109.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 109.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 109.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 108.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 108.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 108.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 108.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 108.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 108.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 107.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 107.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 107.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 106.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 105.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 104.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 104.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 104.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 104.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 103.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 103.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 101.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 100.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 99.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 99.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 99.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 98.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 97.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 97.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 96.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 96.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 96.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 96.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 95.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 94.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 94.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 94.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 93.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 93.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 93.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 93.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 91.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 91.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 89.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 88.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 88.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 88.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 85.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 85.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 85.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 84.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 84.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 82.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 82.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 79.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 79.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 79.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 78.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 71.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 69.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 62.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.5
FF:10164-103B2 76 years, female 82.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.8
Pig sample Sample description nTPM
Caudate
nTPM: 19.8
Samples: 4

Max nTPM: 20.8
Min nTPM: 18.2
Sample A Female 19.7
Sample B Female 20.4
Sample C Male 20.8
Sample D Male 18.2

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