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SELENBP1
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SELENBP1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:71.1 nTPM
FANTOM5:87.3 Scaled Tags Per Million
Pig:59.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA005741Antibody HPA011731Antibody CAB008366
Glial cells Not detectedNot detectedNot detected
Neuronal cells HighNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 71.1
Samples: 300

Max nTPM: 188.4
Min nTPM: 9.1
Std nTPM: 33.0
Median nTPM: 66.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 188.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 178.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 176.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 175.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 171.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 169.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 166.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 156.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 155.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 147.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 145.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 144.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 140.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 132.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 127.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 127.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 127.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 126.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 126.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 125.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 124.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 124.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 123.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 122.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 120.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 120.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 119.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 119.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 118.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 117.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 117.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 115.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 114.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 113.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 111.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 111.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 111.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 110.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 109.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 109.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 109.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 108.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 106.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 105.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 103.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 103.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 103.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 103.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 100.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 100.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 100.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 100.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 99.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 98.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 97.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 96.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 96.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 96.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 95.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 95.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 95.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 94.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 94.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 94.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 94.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 93.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 93.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 93.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 92.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 92.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 90.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 90.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 90.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 89.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 88.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 88.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 88.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 87.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 87.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 86.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 86.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 86.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 86.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 84.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 84.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 83.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 82.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 82.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 82.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 82.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 82.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 81.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 80.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 80.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 80.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 80.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 80.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 79.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 79.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 78.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 78.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 78.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 78.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 78.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 78.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 78.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 78.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 77.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 77.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 77.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 76.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 76.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 76.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 75.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 74.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 74.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 74.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 74.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 74.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 73.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 73.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 73.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 73.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 73.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 72.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 72.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 72.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 72.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 72.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 72.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 71.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 71.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 71.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 71.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 70.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 70.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 70.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 70.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 70.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 69.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 69.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 69.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 69.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 68.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 68.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 67.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 67.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 67.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 67.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 66.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 66.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 66.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 65.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 65.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 65.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 65.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 65.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 64.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 64.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 63.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 63.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 63.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 63.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 63.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 62.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 62.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 60.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 60.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 60.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 60.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 59.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 59.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 59.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 59.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 59.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 58.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 58.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 58.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 57.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 57.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 57.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 56.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 56.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 56.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 55.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 55.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 54.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 54.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 54.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 54.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 54.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 53.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 53.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 53.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 53.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 53.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 53.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 53.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 52.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 52.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 52.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 52.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 51.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 51.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 51.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 51.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 51.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 50.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 50.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 50.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 50.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 50.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 50.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 50.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 49.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 49.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 49.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 49.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 49.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 49.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 49.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 49.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 48.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 48.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 48.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 47.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 47.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 47.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 47.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 47.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 46.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 46.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 44.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 44.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 44.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 44.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 42.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 42.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 42.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 42.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 41.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 41.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 41.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 41.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 41.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 41.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 41.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 41.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 40.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 40.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 40.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 40.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 40.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 39.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 39.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 38.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 38.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 38.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 38.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 38.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 37.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 37.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 36.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 36.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 36.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 35.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 35.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 34.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 34.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 33.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 32.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 31.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 31.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 31.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 30.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 29.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 29.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 29.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 29.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 28.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 27.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 27.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 26.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 26.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 26.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 26.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 24.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 23.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 20.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 19.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 19.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 19.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 18.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 18.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 16.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 13.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 9.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

87.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 87.3
FF:10164-103B2 76 years, female 87.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.3
Pig sample Sample description nTPM
Caudate
nTPM: 59.3
Samples: 4

Max nTPM: 69.3
Min nTPM: 47.0
Sample A Female 59.0
Sample B Female 62.0
Sample C Male 69.3
Sample D Male 47.0

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