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S100A8
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • S100A8
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:59.1 nTPM
FANTOM5:13.1 Scaled Tags Per Million
Pig:0.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA024372Antibody CAB002791
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.1
Samples: 300

Max nTPM: 806.3
Min nTPM: 1.4
Std nTPM: 82.7
Median nTPM: 27.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 806.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 431.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 415.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 350.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 319.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 315.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 263.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 263.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 260.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 256.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 256.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 240.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 238.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 234.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 224.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 223.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 223.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 221.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 187.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 182.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 179.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 178.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 175.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 170.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 164.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 162.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 160.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 155.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 153.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 153.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 142.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 140.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 140.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 136.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 136.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 135.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 134.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 122.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 120.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 120.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 119.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 116.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 113.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 112.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 110.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 109.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 107.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 105.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 105.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 105.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 103.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 103.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 103.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 102.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 102.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 99.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 99.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 99.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 98.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 87.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 85.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 85.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 84.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 84.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 83.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 82.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 82.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 81.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 78.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 78.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 77.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 74.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 74.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 74.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 74.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 74.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 71.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 71.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 71.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 69.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 68.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 65.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 64.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 62.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 62.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 61.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 60.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 60.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 59.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 59.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 59.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 59.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 58.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 58.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 57.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 57.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 56.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 56.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 56.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 56.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 55.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 55.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 55.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 55.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 54.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 53.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 53.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 53.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 51.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 49.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 49.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 49.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 48.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 47.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 47.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 47.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 46.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 46.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 45.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 45.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 42.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 42.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 42.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 41.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 40.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 40.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 40.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 40.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 39.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 38.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 36.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 36.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 35.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 34.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 34.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 34.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 33.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 33.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 32.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 32.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 32.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 31.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 30.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 30.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 30.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 30.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 29.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 28.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 28.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 28.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 27.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 27.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 27.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 26.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 26.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 26.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 25.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 25.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 25.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 25.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 25.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 24.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 24.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 24.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 24.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 23.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 23.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 23.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 23.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 22.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 22.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 22.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 22.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 22.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 22.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 21.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 20.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 20.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 20.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 19.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 18.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 18.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 18.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 18.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 18.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 18.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 18.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 18.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 17.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 17.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 17.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 17.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 17.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 16.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 16.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 15.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 15.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 15.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 15.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 15.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 15.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 15.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 15.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 15.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 14.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 14.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 14.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 14.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 14.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 14.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 13.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 13.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 13.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 13.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 12.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 12.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 12.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 12.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 12.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 12.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 11.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 11.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 11.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 11.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 11.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 11.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 11.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 11.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 11.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 10.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 10.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 10.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 9.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 9.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 9.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 9.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 9.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 9.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 9.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 9.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 9.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 9.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 8.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 8.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 8.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 8.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 7.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 7.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 7.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 7.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 7.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 7.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 7.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 7.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 7.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 7.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 6.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 6.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 6.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 6.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 6.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 6.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 6.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 6.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 6.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 6.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 5.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 5.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 5.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 5.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 5.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 5.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 5.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 5.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 4.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 4.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 4.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 4.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 4.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 4.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 4.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 4.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 4.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 3.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 3.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 3.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 3.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 2.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 2.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 2.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 2.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.1
FF:10164-103B2 76 years, female 13.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.7
Pig sample Sample description nTPM
Caudate
nTPM: 0.7
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.1
Sample A Female 1.1
Sample B Female 0.1
Sample C Male 0.8
Sample D Male 0.8

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