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ARF1
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  • TISSUE

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  • ARF1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:216.1 nTPM
FANTOM5:285.2 Scaled Tags Per Million
Pig:264.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB007742
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 216.1
Samples: 300

Max nTPM: 355.3
Min nTPM: 132.6
Std nTPM: 40.8
Median nTPM: 216.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 355.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 348.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 332.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 324.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 306.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 305.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 303.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 297.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 293.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 288.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 288.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 284.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 284.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 284.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 282.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 281.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 280.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 280.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 279.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 278.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 278.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 276.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 275.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 273.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 273.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 273.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 271.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 268.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 268.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 267.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 266.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 265.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 263.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 263.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 263.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 262.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 262.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 262.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 261.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 261.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 260.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 259.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 259.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 258.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 258.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 258.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 257.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 257.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 257.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 257.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 257.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 256.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 255.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 255.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 253.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 253.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 253.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 253.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 253.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 252.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 252.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 252.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 251.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 250.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 250.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 249.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 249.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 249.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 249.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 247.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 245.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 245.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 245.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 244.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 244.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 244.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 244.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 244.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 243.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 243.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 243.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 242.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 241.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 241.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 241.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 240.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 240.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 240.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 239.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 239.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 238.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 237.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 237.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 237.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 236.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 236.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 235.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 235.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 233.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 233.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 232.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 232.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 232.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 232.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 231.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 231.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 231.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 231.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 230.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 230.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 229.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 228.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 227.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 227.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 226.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 225.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 225.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 224.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 224.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 223.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 223.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 223.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 223.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 223.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 222.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 222.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 222.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 222.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 222.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 222.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 221.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 221.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 221.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 220.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 219.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 219.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 219.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 219.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 218.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 218.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 218.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 218.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 218.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 218.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 218.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 217.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 217.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 217.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 217.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 216.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 216.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 216.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 215.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 215.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 215.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 215.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 215.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 215.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 214.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 214.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 213.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 213.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 212.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 212.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 212.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 211.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 210.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 210.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 210.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 209.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 209.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 209.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 208.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 207.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 206.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 206.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 205.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 204.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 203.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 202.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 201.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 201.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 201.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 201.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 200.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 199.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 199.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 198.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 198.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 198.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 198.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 198.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 196.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 196.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 196.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 195.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 195.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 195.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 194.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 194.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 194.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 193.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 193.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 192.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 192.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 191.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 191.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 191.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 191.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 191.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 191.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 191.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 190.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 190.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 190.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 189.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 188.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 187.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 186.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 186.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 186.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 185.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 185.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 185.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 184.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 184.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 184.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 184.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 183.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 183.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 183.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 183.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 183.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 182.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 182.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 181.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 181.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 181.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 181.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 181.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 180.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 180.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 179.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 177.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 177.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 177.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 177.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 176.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 175.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 174.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 174.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 174.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 174.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 173.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 173.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 172.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 171.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 171.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 170.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 170.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 170.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 169.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 169.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 168.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 167.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 166.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 166.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 166.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 164.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 162.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 161.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 160.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 160.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 159.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 159.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 159.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 158.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 158.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 157.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 155.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 154.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 153.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 151.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 151.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 150.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 150.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 150.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 149.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 149.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 146.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 146.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 143.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 142.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 141.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 140.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 138.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 138.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 138.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 135.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 132.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

285.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 285.2
FF:10164-103B2 76 years, female 285.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.1
Pig sample Sample description nTPM
Caudate
nTPM: 264.1
Samples: 4

Max nTPM: 302.8
Min nTPM: 238.3
Sample A Female 240.5
Sample B Female 274.8
Sample C Male 302.8
Sample D Male 238.3

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