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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • CALM2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1060.0 nTPM
FANTOM5:1046.3 Scaled Tags Per Million
Pig:1152.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044999Antibody CAB007790
Glial cells Not detectedHigh
Neuronal cells MediumHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1060.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1060.0
Samples: 300

Max nTPM: 2741.3
Min nTPM: 352.2
Std nTPM: 354.9
Median nTPM: 1029.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2741.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2670.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2267.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2231.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2202.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2092.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1908.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1848.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1811.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1781.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1749.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1746.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1694.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1671.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1659.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1651.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1646.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1642.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1641.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1631.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1620.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1591.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1574.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1544.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1535.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1515.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1507.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1493.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1490.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1489.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1489.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1488.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1483.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1483.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1482.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1464.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1460.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1437.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1431.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1431.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1418.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1417.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1412.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1408.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1406.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1404.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1403.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1398.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1388.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1381.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1377.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1369.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1354.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1344.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1339.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1320.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1319.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1318.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1315.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1304.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1301.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1296.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1293.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1289.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1286.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1278.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1277.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1267.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1249.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1248.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1235.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1235.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1231.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1226.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1216.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1211.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1211.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1209.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1203.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1199.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1196.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1194.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1191.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1187.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1186.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1177.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1176.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1173.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1172.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1169.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1167.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1166.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1164.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1160.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1160.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1160.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1160.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1151.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1150.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1146.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1143.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1142.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1141.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1140.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1136.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1135.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1134.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1124.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1124.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1120.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1112.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1112.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1111.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1110.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1107.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1103.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1101.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1101.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1100.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1099.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1099.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1097.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1097.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1095.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1095.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1093.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1079.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1078.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1077.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1077.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1072.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1067.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1065.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1065.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1061.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1055.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1055.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1053.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1051.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1045.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1044.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1043.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1042.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1038.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1037.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1034.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1033.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1031.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1030.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1029.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1029.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1022.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1020.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1019.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1019.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1016.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1016.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1016.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1015.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1013.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1002.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1000.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1000.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 993.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 992.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 991.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 991.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 989.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 989.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 988.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 984.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 980.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 977.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 970.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 969.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 969.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 966.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 965.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 964.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 959.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 947.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 946.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 943.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 940.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 938.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 938.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 934.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 934.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 930.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 929.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 927.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 922.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 917.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 917.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 917.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 915.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 914.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 908.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 908.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 899.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 895.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 894.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 887.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 881.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 871.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 865.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 863.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 855.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 853.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 844.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 843.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 843.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 842.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 838.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 836.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 836.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 835.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 831.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 821.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 820.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 820.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 818.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 813.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 813.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 807.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 806.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 796.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 791.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 791.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 787.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 784.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 784.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 782.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 780.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 779.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 779.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 775.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 771.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 767.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 766.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 748.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 744.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 738.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 734.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 733.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 729.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 729.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 726.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 722.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 721.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 716.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 715.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 714.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 713.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 708.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 707.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 707.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 705.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 703.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 703.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 703.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 696.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 690.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 690.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 689.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 683.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 680.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 679.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 679.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 677.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 675.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 671.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 670.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 668.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 654.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 650.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 644.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 641.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 639.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 639.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 632.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 625.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 621.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 620.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 614.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 595.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 591.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 590.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 586.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 581.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 554.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 547.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 484.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 475.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 472.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 457.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 407.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 378.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 357.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 352.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1046.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1046.3
FF:10164-103B2 76 years, female 1046.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1152.4
Pig sample Sample description nTPM
Caudate
nTPM: 1152.4
Samples: 4

Max nTPM: 1277.9
Min nTPM: 1061.3
Sample A Female 1159.6
Sample B Female 1061.3
Sample C Male 1277.9
Sample D Male 1110.7

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