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NDUFS6
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  • TISSUE

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  • NDUFS6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:145.6 nTPM
FANTOM5:86.8 Scaled Tags Per Million
Pig:37.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA064221
Glial cells Medium
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 145.6
Samples: 300

Max nTPM: 307.6
Min nTPM: 74.7
Std nTPM: 38.6
Median nTPM: 138.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 307.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 307.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 301.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 286.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 275.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 265.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 261.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 258.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 256.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 245.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 240.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 232.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 224.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 220.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 217.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 212.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 210.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 209.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 208.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 204.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 204.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 201.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 201.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 200.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 198.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 197.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 196.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 196.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 194.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 191.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 191.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 189.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 189.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 188.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 188.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 188.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 187.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 187.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 185.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 185.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 184.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 183.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 183.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 183.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 183.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 182.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 182.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 181.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 178.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 177.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 177.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 177.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 176.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 176.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 174.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 174.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 172.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 170.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 169.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 168.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 168.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 167.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 167.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 167.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 167.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 166.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 166.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 165.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 164.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 163.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 162.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 162.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 162.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 162.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 161.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 160.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 160.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 159.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 159.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 158.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 158.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 158.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 157.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 157.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 156.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 155.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 155.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 155.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 155.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 155.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 154.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 154.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 153.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 153.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 153.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 153.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 153.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 152.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 152.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 151.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 151.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 151.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 151.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 150.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 149.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 149.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 149.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 149.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 148.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 148.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 148.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 148.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 148.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 148.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 147.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 147.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 147.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 146.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 146.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 146.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 146.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 146.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 145.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 145.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 145.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 145.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 144.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 144.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 143.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 143.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 142.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 142.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 142.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 141.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 141.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 141.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 141.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 141.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 141.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 141.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 140.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 140.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 140.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 140.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 140.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 139.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 139.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 139.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 139.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 138.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 138.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 138.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 137.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 136.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 136.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 135.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 135.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 135.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 135.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 135.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 134.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 134.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 134.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 133.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 133.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 133.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 133.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 133.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 133.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 133.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 132.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 132.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 132.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 132.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 132.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 131.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 131.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 131.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 130.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 130.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 130.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 130.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 130.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 130.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 129.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 129.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 129.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 129.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 128.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 128.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 128.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 127.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 127.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 127.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 127.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 127.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 126.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 126.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 126.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 126.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 125.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 125.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 125.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 124.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 124.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 124.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 124.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 123.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 123.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 123.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 122.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 122.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 122.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 122.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 122.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 122.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 121.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 121.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 121.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 120.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 120.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 120.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 120.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 120.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 119.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 119.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 119.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 119.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 119.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 119.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 118.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 118.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 118.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 117.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 117.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 117.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 117.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 116.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 116.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 116.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 116.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 116.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 116.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 115.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 115.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 113.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 113.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 113.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 112.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 112.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 112.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 111.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 111.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 111.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 111.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 110.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 110.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 110.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 110.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 110.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 110.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 109.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 109.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 109.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 109.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 109.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 108.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 108.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 108.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 108.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 107.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 107.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 107.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 106.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 106.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 106.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 106.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 105.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 104.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 103.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 102.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 102.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 101.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 99.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 98.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 98.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 97.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 96.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 95.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 95.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 94.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 92.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 91.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 90.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 88.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 88.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 86.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 84.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 83.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 74.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.8
FF:10164-103B2 76 years, female 86.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.8
Pig sample Sample description nTPM
Caudate
nTPM: 37.8
Samples: 4

Max nTPM: 45.4
Min nTPM: 32.3
Sample A Female 34.8
Sample B Female 38.6
Sample C Male 45.4
Sample D Male 32.3

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