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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • NHP2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:141.0 nTPM
FANTOM5:86.2 Scaled Tags Per Million
Pig:56.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044171Antibody HPA050400
Glial cells LowNot detected
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 141.0
Samples: 300

Max nTPM: 317.6
Min nTPM: 76.5
Std nTPM: 36.3
Median nTPM: 135.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 317.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 271.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 258.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 243.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 243.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 242.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 241.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 237.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 227.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 221.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 221.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 220.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 220.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 217.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 212.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 207.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 205.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 205.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 205.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 203.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 202.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 201.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 200.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 199.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 199.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 198.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 195.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 195.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 195.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 191.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 190.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 188.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 188.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 183.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 181.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 180.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 180.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 180.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 180.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 178.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 177.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 176.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 176.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 176.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 175.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 175.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 175.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 174.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 173.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 173.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 172.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 171.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 171.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 170.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 169.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 169.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 168.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 166.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 166.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 165.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 165.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 164.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 164.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 164.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 163.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 163.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 162.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 162.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 162.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 161.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 160.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 159.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 159.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 158.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 158.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 157.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 156.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 156.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 155.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 155.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 154.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 154.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 154.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 153.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 152.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 152.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 152.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 152.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 151.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 151.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 150.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 150.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 149.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 149.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 149.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 149.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 149.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 148.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 148.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 147.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 147.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 147.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 147.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 146.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 146.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 145.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 145.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 145.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 145.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 145.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 144.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 144.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 144.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 143.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 143.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 143.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 143.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 142.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 141.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 141.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 141.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 141.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 140.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 140.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 140.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 140.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 140.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 140.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 139.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 139.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 139.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 139.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 139.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 138.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 138.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 138.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 137.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 137.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 137.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 137.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 137.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 136.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 136.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 136.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 136.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 135.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 135.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 135.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 135.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 135.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 134.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 134.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 134.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 134.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 133.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 132.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 132.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 132.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 132.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 132.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 132.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 132.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 131.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 131.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 131.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 130.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 130.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 130.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 130.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 130.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 130.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 130.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 130.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 129.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 129.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 128.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 128.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 128.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 128.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 127.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 127.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 127.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 127.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 127.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 127.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 127.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 126.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 126.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 125.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 125.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 125.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 125.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 125.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 124.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 124.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 124.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 124.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 124.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 123.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 123.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 123.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 123.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 122.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 122.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 121.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 121.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 121.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 120.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 120.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 120.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 120.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 120.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 120.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 120.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 119.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 119.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 119.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 119.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 118.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 118.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 118.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 117.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 117.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 117.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 116.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 116.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 116.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 116.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 116.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 115.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 115.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 115.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 114.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 114.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 113.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 113.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 113.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 113.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 113.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 113.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 112.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 112.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 112.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 111.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 111.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 111.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 110.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 110.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 110.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 110.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 109.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 109.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 108.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 107.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 107.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 107.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 107.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 107.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 106.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 106.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 105.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 104.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 104.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 104.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 103.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 102.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 102.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 102.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 101.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 100.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 100.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 100.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 99.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 99.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 99.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 97.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 97.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 96.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 95.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 95.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 94.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 94.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 92.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 92.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 92.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 91.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 91.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 90.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 88.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 88.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 87.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 87.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 86.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 85.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 85.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 85.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 79.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 77.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 76.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.2
FF:10164-103B2 76 years, female 86.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.4
Pig sample Sample description nTPM
Caudate
nTPM: 56.4
Samples: 4

Max nTPM: 69.7
Min nTPM: 49.9
Sample A Female 52.1
Sample B Female 53.8
Sample C Male 69.7
Sample D Male 49.9

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