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  • SUMMARY

  • TISSUE

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  • CAMK2G
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:42.8 nTPM
FANTOM5:83.9 Scaled Tags Per Million
Pig:26.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051783Antibody HPA051785Antibody HPA053973
Glial cells Not detectedNot detectedNot detected
Neuronal cells HighMediumMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.8
Samples: 300

Max nTPM: 92.3
Min nTPM: 15.4
Std nTPM: 15.0
Median nTPM: 39.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 92.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 89.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 88.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 84.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 84.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 81.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 81.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 78.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 78.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 77.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 77.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 75.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 75.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 75.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 74.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 74.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 73.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 73.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 73.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 69.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 68.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 68.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 67.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 67.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 67.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 67.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 67.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 66.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 66.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 66.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 66.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 65.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 65.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 64.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 63.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 63.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 62.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 62.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 61.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 60.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 59.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 59.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 58.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 58.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 58.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 57.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 57.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 56.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 56.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 55.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 55.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 55.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 55.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 54.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 54.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 54.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 53.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 53.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 53.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 52.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 52.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 52.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 52.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 51.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 51.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 51.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 51.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 51.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 50.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 50.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 50.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 50.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 49.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 49.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 49.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 49.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 48.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 48.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 48.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 48.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 48.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 48.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 48.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 47.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 47.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 47.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 47.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 47.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 47.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 47.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 47.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 46.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 46.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 46.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 46.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 46.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 46.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 45.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 45.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 45.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 44.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 44.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 44.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 44.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 44.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 44.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 43.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 43.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 43.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 43.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 43.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 43.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 43.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 42.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 42.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 42.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 42.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 41.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 41.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 41.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 41.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 41.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 41.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 41.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 41.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 41.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 41.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 41.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 40.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 40.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 40.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 40.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 40.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 40.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 40.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 40.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 40.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 40.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 40.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 40.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 40.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 40.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 40.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 40.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 39.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 39.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 39.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 39.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 39.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 39.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 39.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 39.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 39.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 39.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 39.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 39.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 39.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 38.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 38.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 38.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 38.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 38.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 38.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 38.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 38.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 37.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 37.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 37.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 37.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 37.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 37.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 37.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 37.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 37.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 37.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 37.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 37.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 36.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 36.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 36.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 36.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 36.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 36.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 36.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 36.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 36.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 36.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 36.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 36.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 36.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 36.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 36.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 36.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 36.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 36.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 36.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 35.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 35.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 35.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 35.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 35.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 35.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 35.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 35.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 35.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 35.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 34.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 34.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 34.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 34.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 34.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 34.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 34.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 34.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 34.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 33.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 33.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 33.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 33.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 33.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 33.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 33.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 33.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 32.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 32.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 32.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 32.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 32.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 32.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 32.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 32.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 31.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 31.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 31.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 31.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 31.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 31.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 31.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 31.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 31.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 31.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 31.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 31.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 31.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 31.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 31.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 31.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 30.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 30.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 30.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 30.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 29.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 29.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 29.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 29.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 29.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 29.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 29.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 28.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 28.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 27.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 27.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 27.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 26.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 26.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 26.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 26.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 26.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 26.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 25.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 25.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 25.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 25.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 24.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 24.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 24.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 24.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 24.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 24.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 24.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 24.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 23.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 22.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 22.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 22.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 21.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 21.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 20.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 20.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 20.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 19.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 19.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 18.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 17.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 17.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 16.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 16.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 15.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

83.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 83.9
FF:10164-103B2 76 years, female 83.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.8
Pig sample Sample description nTPM
Caudate
nTPM: 26.8
Samples: 4

Max nTPM: 29.2
Min nTPM: 22.6
Sample A Female 29.2
Sample B Female 28.1
Sample C Male 27.2
Sample D Male 22.6

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