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TMEM219
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TMEM219
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:207.7 nTPM
FANTOM5:40.1 Scaled Tags Per Million
Pig:21.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA059185
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 207.7
Samples: 300

Max nTPM: 494.9
Min nTPM: 85.6
Std nTPM: 68.9
Median nTPM: 190.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 494.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 456.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 447.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 440.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 434.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 418.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 412.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 394.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 384.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 371.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 369.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 364.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 363.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 360.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 358.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 342.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 338.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 327.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 326.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 326.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 323.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 322.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 321.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 320.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 320.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 317.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 309.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 308.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 300.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 299.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 297.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 296.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 293.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 290.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 287.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 286.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 286.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 280.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 276.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 275.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 274.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 272.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 272.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 270.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 269.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 268.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 265.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 264.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 264.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 263.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 263.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 262.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 262.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 261.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 260.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 260.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 259.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 259.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 259.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 257.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 254.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 252.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 250.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 248.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 248.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 248.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 248.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 248.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 244.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 243.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 243.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 243.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 240.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 239.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 239.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 238.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 238.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 237.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 235.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 233.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 233.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 233.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 232.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 232.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 231.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 230.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 230.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 230.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 229.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 229.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 228.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 227.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 225.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 224.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 223.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 223.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 223.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 222.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 221.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 221.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 220.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 220.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 220.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 219.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 218.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 216.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 216.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 215.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 215.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 213.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 213.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 212.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 212.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 212.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 212.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 212.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 211.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 211.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 210.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 208.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 208.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 206.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 206.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 205.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 205.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 204.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 204.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 203.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 203.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 203.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 202.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 202.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 201.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 201.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 201.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 200.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 200.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 200.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 198.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 196.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 196.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 195.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 194.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 192.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 192.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 191.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 191.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 191.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 191.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 191.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 190.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 189.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 189.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 188.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 188.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 187.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 187.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 186.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 185.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 184.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 184.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 184.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 184.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 184.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 183.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 183.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 182.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 181.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 181.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 180.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 180.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 180.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 179.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 179.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 179.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 179.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 178.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 178.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 178.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 177.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 177.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 177.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 176.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 176.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 176.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 175.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 175.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 174.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 174.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 174.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 173.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 173.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 173.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 173.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 172.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 172.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 172.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 171.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 171.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 171.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 171.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 171.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 171.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 171.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 171.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 170.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 170.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 170.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 170.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 169.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 169.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 168.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 168.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 168.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 166.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 166.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 165.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 165.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 164.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 164.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 163.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 163.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 163.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 163.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 163.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 163.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 163.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 158.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 156.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 155.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 153.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 153.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 153.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 153.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 152.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 152.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 151.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 151.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 151.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 151.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 151.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 151.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 151.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 150.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 150.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 150.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 149.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 147.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 147.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 147.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 146.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 146.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 146.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 146.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 146.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 145.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 145.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 145.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 145.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 144.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 144.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 143.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 143.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 143.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 142.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 142.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 141.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 141.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 140.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 140.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 140.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 139.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 138.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 136.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 136.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 135.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 135.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 134.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 134.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 134.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 134.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 131.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 129.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 128.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 127.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 126.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 124.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 124.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 120.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 120.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 119.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 117.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 113.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 113.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 107.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 107.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 104.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 95.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 93.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 85.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

40.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.1
FF:10164-103B2 76 years, female 40.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.0
Pig sample Sample description nTPM
Caudate
nTPM: 21.0
Samples: 4

Max nTPM: 23.1
Min nTPM: 18.0
Sample A Female 20.4
Sample B Female 22.3
Sample C Male 23.1
Sample D Male 18.0

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