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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:153.8 nTPM
FANTOM5:587.0 Scaled Tags Per Million
Pig:665.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003733Antibody CAB068243Antibody CAB068244
Glial cells Not detectedLowNot detected
Neuronal cells Not detectedMediumMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 153.8
Samples: 300

Max nTPM: 514.4
Min nTPM: 5.7
Std nTPM: 95.3
Median nTPM: 142.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 514.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 434.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 411.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 400.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 395.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 391.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 386.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 374.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 373.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 356.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 350.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 348.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 341.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 338.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 333.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 332.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 324.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 318.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 317.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 316.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 315.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 313.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 308.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 308.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 303.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 300.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 300.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 297.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 296.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 296.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 287.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 287.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 287.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 278.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 277.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 277.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 276.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 275.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 269.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 268.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 266.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 266.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 266.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 264.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 257.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 254.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 252.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 248.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 247.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 244.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 243.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 237.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 236.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 235.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 235.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 233.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 233.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 232.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 231.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 231.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 230.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 225.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 225.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 225.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 224.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 224.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 224.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 224.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 222.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 217.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 215.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 215.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 213.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 213.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 212.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 212.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 208.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 208.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 207.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 205.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 203.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 203.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 201.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 201.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 200.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 199.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 197.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 196.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 196.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 193.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 191.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 188.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 186.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 186.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 186.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 182.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 179.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 179.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 178.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 178.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 178.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 177.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 177.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 176.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 176.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 176.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 175.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 175.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 174.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 174.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 173.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 173.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 173.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 172.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 172.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 171.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 170.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 170.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 170.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 169.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 166.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 166.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 166.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 164.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 164.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 162.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 162.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 160.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 160.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 159.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 159.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 158.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 158.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 157.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 157.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 157.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 156.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 153.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 153.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 151.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 150.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 149.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 149.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 148.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 148.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 147.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 144.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 144.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 143.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 142.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 142.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 142.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 140.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 140.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 140.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 139.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 139.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 137.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 135.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 134.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 133.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 133.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 131.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 130.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 130.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 129.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 129.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 129.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 129.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 128.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 128.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 127.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 126.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 125.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 124.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 124.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 123.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 122.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 122.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 122.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 122.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 121.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 120.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 120.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 117.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 116.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 114.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 114.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 113.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 112.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 111.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 109.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 108.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 108.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 107.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 107.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 104.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 103.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 103.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 102.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 102.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 101.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 101.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 96.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 96.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 93.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 93.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 90.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 90.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 90.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 89.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 89.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 87.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 86.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 84.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 83.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 83.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 82.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 82.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 82.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 81.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 79.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 77.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 76.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 75.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 74.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 74.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 72.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 71.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 67.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 67.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 66.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 65.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 65.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 65.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 63.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 61.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 60.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 60.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 60.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 59.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 59.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 58.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 58.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 56.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 56.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 55.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 53.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 53.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 53.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 53.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 52.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 52.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 51.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 51.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 51.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 50.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 49.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 49.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 47.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 47.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 46.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 46.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 46.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 46.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 45.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 45.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 44.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 42.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 41.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 41.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 41.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 40.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 40.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 39.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 37.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 37.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 36.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 35.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 31.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 28.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 26.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 26.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 26.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 26.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 25.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 24.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 24.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 20.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 19.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 15.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 15.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 13.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 11.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 9.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 6.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 5.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

587.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 587.0
FF:10164-103B2 76 years, female 587.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

665.2
Pig sample Sample description nTPM
Caudate
nTPM: 665.2
Samples: 4

Max nTPM: 839.7
Min nTPM: 483.2
Sample A Female 483.2
Sample B Female 702.6
Sample C Male 839.7
Sample D Male 635.4

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