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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • ATP5PF
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:246.5 nTPM
FANTOM5:262.5 Scaled Tags Per Million
Pig:36.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA031069
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 246.5
Samples: 300

Max nTPM: 619.6
Min nTPM: 133.7
Std nTPM: 70.5
Median nTPM: 231.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 619.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 577.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 575.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 548.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 500.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 485.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 456.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 429.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 429.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 424.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 416.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 409.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 388.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 380.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 377.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 377.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 374.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 373.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 358.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 357.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 356.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 355.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 342.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 334.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 332.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 329.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 328.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 327.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 320.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 319.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 318.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 317.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 316.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 315.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 314.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 313.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 312.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 311.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 308.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 308.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 304.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 304.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 302.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 300.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 298.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 297.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 296.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 295.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 295.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 294.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 293.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 292.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 291.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 291.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 290.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 289.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 288.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 287.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 285.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 285.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 283.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 282.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 281.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 281.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 280.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 278.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 276.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 274.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 273.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 272.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 272.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 271.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 271.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 271.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 270.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 270.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 269.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 268.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 267.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 265.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 265.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 265.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 263.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 263.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 262.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 262.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 262.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 261.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 260.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 259.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 258.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 258.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 257.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 255.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 255.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 255.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 255.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 255.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 254.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 254.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 254.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 254.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 253.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 252.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 251.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 251.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 251.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 251.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 250.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 250.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 250.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 250.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 249.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 244.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 244.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 244.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 244.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 243.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 243.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 243.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 243.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 242.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 242.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 242.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 241.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 241.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 241.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 240.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 240.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 239.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 239.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 239.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 237.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 237.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 237.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 236.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 236.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 236.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 236.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 235.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 235.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 235.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 235.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 235.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 235.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 234.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 234.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 233.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 233.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 231.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 231.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 231.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 230.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 230.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 229.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 229.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 229.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 228.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 227.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 227.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 227.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 227.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 226.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 225.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 225.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 225.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 224.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 223.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 222.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 222.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 222.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 221.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 221.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 220.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 220.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 219.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 219.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 219.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 219.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 219.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 218.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 218.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 218.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 218.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 218.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 217.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 217.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 217.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 216.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 216.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 216.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 215.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 215.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 215.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 215.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 215.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 214.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 214.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 214.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 213.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 213.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 213.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 212.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 212.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 212.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 212.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 211.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 211.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 211.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 211.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 211.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 210.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 210.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 209.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 209.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 208.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 207.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 207.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 207.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 206.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 206.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 206.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 205.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 204.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 203.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 202.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 202.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 201.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 201.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 201.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 201.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 201.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 200.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 199.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 199.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 199.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 199.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 198.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 198.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 197.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 197.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 197.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 196.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 195.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 194.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 194.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 194.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 194.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 193.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 193.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 192.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 191.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 191.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 190.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 190.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 190.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 190.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 189.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 188.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 187.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 186.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 186.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 185.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 185.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 185.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 185.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 184.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 183.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 182.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 182.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 182.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 181.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 181.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 181.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 180.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 180.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 179.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 179.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 174.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 171.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 167.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 167.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 164.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 164.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 164.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 163.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 163.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 162.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 159.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 159.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 158.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 158.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 157.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 153.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 150.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 150.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 148.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 148.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 136.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 133.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

262.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 262.5
FF:10164-103B2 76 years, female 262.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.3
Pig sample Sample description nTPM
Caudate
nTPM: 36.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 29.8
Sample A Female 36.3
Sample B Female 39.9
Sample C Male 39.3
Sample D Male 29.8

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