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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:176.1 nTPM
FANTOM5:196.8 Scaled Tags Per Million
Pig:151.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019472Antibody CAB000075Antibody CAB034105
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 176.1
Samples: 300

Max nTPM: 672.6
Min nTPM: 1.3
Std nTPM: 112.7
Median nTPM: 170.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 672.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 564.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 442.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 433.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 433.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 429.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 417.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 405.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 399.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 397.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 386.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 379.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 378.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 373.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 364.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 363.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 355.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 350.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 344.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 341.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 340.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 340.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 334.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 333.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 329.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 329.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 326.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 326.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 325.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 318.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 314.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 314.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 312.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 310.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 310.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 310.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 309.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 307.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 301.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 299.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 299.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 297.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 297.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 295.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 294.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 293.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 293.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 292.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 288.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 286.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 285.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 283.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 282.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 282.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 282.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 281.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 280.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 279.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 279.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 279.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 277.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 276.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 274.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 274.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 271.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 270.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 268.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 267.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 265.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 264.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 263.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 262.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 261.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 257.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 256.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 255.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 253.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 252.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 251.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 250.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 249.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 248.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 248.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 247.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 247.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 246.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 246.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 246.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 241.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 240.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 240.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 237.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 236.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 235.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 234.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 233.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 233.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 232.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 229.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 228.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 226.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 223.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 218.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 218.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 217.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 217.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 215.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 210.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 209.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 209.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 208.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 208.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 208.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 206.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 205.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 205.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 204.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 203.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 202.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 202.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 200.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 199.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 198.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 197.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 197.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 196.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 195.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 195.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 195.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 195.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 193.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 192.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 192.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 192.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 190.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 187.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 186.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 185.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 184.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 184.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 183.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 183.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 183.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 182.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 177.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 176.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 174.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 174.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 174.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 172.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 169.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 169.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 168.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 165.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 162.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 162.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 157.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 157.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 154.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 154.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 154.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 154.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 153.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 151.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 151.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 145.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 145.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 144.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 143.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 143.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 142.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 142.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 142.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 142.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 140.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 140.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 140.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 139.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 138.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 136.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 136.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 135.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 133.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 132.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 131.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 129.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 127.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 126.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 126.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 123.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 122.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 121.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 120.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 118.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 117.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 117.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 115.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 113.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 112.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 112.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 108.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 108.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 105.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 104.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 100.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 98.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 97.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 97.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 96.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 96.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 95.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 94.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 93.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 93.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 93.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 92.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 91.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 91.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 91.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 90.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 89.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 89.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 89.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 89.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 87.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 87.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 86.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 85.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 85.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 85.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 82.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 81.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 80.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 79.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 75.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 74.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 72.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 72.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 69.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 67.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 66.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 64.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 64.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 63.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 63.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 62.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 60.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 59.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 59.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 58.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 57.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 56.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 56.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 55.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 54.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 53.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 51.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 51.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 48.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 46.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 44.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 42.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 42.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 40.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 37.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 36.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 29.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 29.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 28.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 26.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 26.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 25.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 24.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 23.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 22.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 21.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 21.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 20.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 19.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 18.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 16.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 16.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 15.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 15.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 15.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 14.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 14.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 13.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 13.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 12.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 9.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 8.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 8.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 8.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 7.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 6.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 5.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 4.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 4.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 196.8
FF:10164-103B2 76 years, female 196.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.3
Pig sample Sample description nTPM
Caudate
nTPM: 151.3
Samples: 4

Max nTPM: 163.5
Min nTPM: 139.2
Sample A Female 154.9
Sample B Female 163.5
Sample C Male 147.7
Sample D Male 139.2

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