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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ABR
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:70.1 nTPM
FANTOM5:197.4 Scaled Tags Per Million
Pig:152.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA054824
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 70.1
Samples: 300

Max nTPM: 130.1
Min nTPM: 15.7
Std nTPM: 22.0
Median nTPM: 69.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 130.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 127.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 123.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 123.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 121.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 119.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 118.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 118.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 117.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 117.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 116.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 115.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 115.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 114.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 114.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 113.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 113.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 111.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 111.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 108.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 107.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 103.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 103.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 102.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 100.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 100.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 100.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 99.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 99.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 99.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 99.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 98.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 98.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 98.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 97.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 97.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 97.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 96.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 96.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 95.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 95.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 94.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 94.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 94.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 93.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 92.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 92.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 92.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 91.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 91.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 91.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 91.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 90.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 89.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 89.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 89.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 88.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 88.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 88.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 88.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 87.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 87.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 86.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 85.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 85.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 85.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 85.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 84.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 84.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 84.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 83.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 83.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 82.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 82.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 82.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 81.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 80.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 80.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 80.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 80.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 80.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 80.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 80.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 80.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 79.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 79.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 79.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 79.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 78.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 78.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 78.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 78.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 78.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 77.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 77.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 77.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 77.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 77.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 77.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 77.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 76.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 76.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 76.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 76.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 76.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 76.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 75.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 75.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 75.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 75.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 75.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 75.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 75.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 75.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 74.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 74.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 74.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 74.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 73.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 73.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 73.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 73.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 72.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 72.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 72.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 72.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 72.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 71.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 71.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 71.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 71.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 71.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 71.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 71.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 71.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 70.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 70.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 70.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 69.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 69.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 69.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 69.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 69.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 69.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 69.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 69.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 69.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 69.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 69.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 69.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 68.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 68.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 68.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 68.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 68.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 68.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 68.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 68.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 68.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 67.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 67.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 67.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 67.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 66.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 66.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 66.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 66.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 66.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 66.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 66.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 65.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 65.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 65.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 65.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 65.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 65.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 65.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 65.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 65.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 64.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 64.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 64.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 64.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 64.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 63.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 63.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 63.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 63.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 63.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 63.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 63.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 62.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 62.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 61.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 61.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 61.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 61.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 61.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 61.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 61.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 60.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 60.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 60.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 60.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 60.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 59.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 59.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 59.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 58.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 58.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 57.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 57.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 57.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 56.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 56.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 56.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 56.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 56.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 56.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 56.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 55.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 55.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 55.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 54.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 54.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 54.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 54.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 54.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 54.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 54.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 54.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 53.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 53.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 53.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 53.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 53.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 53.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 52.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 52.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 52.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 52.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 51.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 51.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 51.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 51.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 51.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 50.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 49.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 49.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 48.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 48.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 48.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 48.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 47.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 47.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 47.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 46.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 46.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 46.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 46.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 46.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 45.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 44.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 44.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 43.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 43.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 43.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 42.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 40.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 40.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 39.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 39.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 39.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 37.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 37.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 36.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 36.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 36.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 35.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 35.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 34.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 33.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 33.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 33.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 33.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 33.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 31.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 31.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 31.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 30.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 29.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 29.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 24.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 23.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 21.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 17.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 15.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 197.4
FF:10164-103B2 76 years, female 197.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.2
Pig sample Sample description nTPM
Caudate
nTPM: 152.2
Samples: 4

Max nTPM: 176.2
Min nTPM: 136.6
Sample A Female 138.0
Sample B Female 157.9
Sample C Male 176.2
Sample D Male 136.6

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