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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:111.0 nTPM
FANTOM5:217.3 Scaled Tags Per Million
Pig:0.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA069290
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 111.0
Samples: 300

Max nTPM: 194.5
Min nTPM: 58.7
Std nTPM: 23.7
Median nTPM: 107.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 194.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 192.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 188.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 182.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 179.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 178.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 175.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 172.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 172.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 171.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 162.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 161.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 159.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 158.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 157.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 156.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 156.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 156.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 155.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 153.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 152.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 151.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 146.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 145.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 145.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 144.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 143.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 142.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 142.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 140.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 140.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 140.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 138.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 138.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 138.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 137.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 137.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 135.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 135.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 135.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 134.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 134.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 134.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 134.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 133.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 133.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 132.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 132.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 131.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 131.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 131.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 131.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 131.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 129.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 129.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 128.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 128.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 128.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 127.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 127.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 127.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 127.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 126.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 126.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 126.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 126.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 126.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 125.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 125.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 125.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 125.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 124.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 123.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 123.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 123.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 123.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 123.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 123.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 123.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 122.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 122.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 121.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 121.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 121.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 121.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 121.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 121.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 120.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 120.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 120.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 119.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 119.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 119.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 118.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 118.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 118.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 118.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 118.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 118.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 118.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 117.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 117.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 117.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 116.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 116.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 116.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 116.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 115.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 115.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 115.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 115.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 115.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 114.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 114.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 114.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 113.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 113.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 113.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 113.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 113.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 113.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 113.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 113.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 112.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 112.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 112.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 111.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 111.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 111.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 111.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 111.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 110.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 110.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 110.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 110.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 110.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 110.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 109.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 109.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 109.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 109.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 109.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 109.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 109.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 108.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 108.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 108.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 108.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 108.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 107.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 107.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 107.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 107.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 107.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 107.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 107.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 107.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 107.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 106.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 106.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 106.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 106.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 105.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 105.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 105.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 104.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 104.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 104.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 104.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 104.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 104.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 103.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 103.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 103.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 103.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 103.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 102.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 102.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 102.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 101.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 101.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 101.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 100.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 100.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 100.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 100.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 100.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 100.5
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 100.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 100.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 100.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 99.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 99.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 99.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 99.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 99.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 99.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 99.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 98.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 98.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 98.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 98.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 98.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 98.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 98.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 97.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 97.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 97.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 97.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 97.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 97.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 97.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 97.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 97.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 97.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 97.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 96.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 96.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 96.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 96.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 96.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 95.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 95.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 95.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 95.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 95.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 94.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 94.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 94.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 94.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 94.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 93.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 93.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 93.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 93.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 93.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 93.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 93.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 93.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 93.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 93.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 93.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 92.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 91.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 91.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 91.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 91.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 91.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 91.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 90.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 90.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 89.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 88.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 88.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 88.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 87.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 87.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 87.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 87.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 86.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 86.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 86.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 85.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 84.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 84.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 84.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 84.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 84.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 83.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 82.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 82.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 82.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 82.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 82.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 82.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 82.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 81.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 81.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 81.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 81.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 79.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 79.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 79.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 79.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 79.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 79.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 78.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 78.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 76.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 75.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 75.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 74.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 73.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 71.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 71.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 70.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 69.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 68.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 66.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 58.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

217.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 217.3
FF:10164-103B2 76 years, female 217.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.2
Pig sample Sample description nTPM
Caudate
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.5

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