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  • SUMMARY

  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:229.2 nTPM
FANTOM5:284.4 Scaled Tags Per Million
Pig:97.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA017380Antibody HPA058557Antibody CAB047320
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedLow







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 229.2
Samples: 300

Max nTPM: 379.9
Min nTPM: 119.2
Std nTPM: 52.1
Median nTPM: 223.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 379.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 378.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 367.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 367.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 365.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 351.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 349.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 345.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 345.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 344.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 341.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 337.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 334.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 334.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 331.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 327.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 322.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 322.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 318.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 318.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 316.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 315.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 314.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 312.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 311.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 310.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 309.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 306.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 306.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 304.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 303.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 300.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 297.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 296.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 296.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 293.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 293.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 291.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 291.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 287.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 286.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 284.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 284.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 283.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 281.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 280.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 280.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 280.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 279.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 278.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 278.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 277.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 277.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 273.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 273.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 273.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 272.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 272.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 271.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 271.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 270.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 269.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 269.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 268.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 268.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 268.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 268.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 265.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 263.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 263.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 263.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 262.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 262.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 261.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 260.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 260.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 260.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 258.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 258.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 258.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 257.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 257.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 256.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 256.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 256.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 255.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 255.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 253.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 253.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 253.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 253.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 252.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 252.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 251.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 248.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 248.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 247.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 247.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 246.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 246.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 245.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 245.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 245.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 244.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 244.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 243.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 242.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 242.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 241.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 241.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 241.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 240.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 240.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 239.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 239.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 238.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 238.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 237.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 237.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 236.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 236.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 236.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 235.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 235.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 234.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 234.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 234.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 234.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 233.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 232.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 232.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 231.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 230.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 229.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 229.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 229.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 229.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 228.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 228.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 227.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 227.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 227.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 226.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 226.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 226.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 226.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 225.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 225.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 224.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 223.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 223.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 222.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 222.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 222.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 221.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 219.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 219.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 218.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 217.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 217.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 217.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 216.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 216.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 215.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 215.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 215.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 214.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 214.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 213.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 213.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 213.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 213.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 212.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 212.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 212.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 211.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 211.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 210.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 210.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 210.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 210.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 209.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 209.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 208.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 208.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 208.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 206.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 206.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 206.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 206.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 205.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 205.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 205.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 205.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 205.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 204.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 204.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 203.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 203.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 202.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 202.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 202.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 201.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 201.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 201.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 201.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 200.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 200.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 199.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 198.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 198.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 198.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 197.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 197.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 197.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 197.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 197.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 196.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 196.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 196.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 196.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 195.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 193.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 192.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 192.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 191.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 191.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 191.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 190.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 190.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 190.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 189.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 189.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 189.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 189.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 188.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 187.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 187.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 186.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 186.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 186.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 185.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 185.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 184.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 184.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 184.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 184.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 183.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 183.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 183.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 183.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 182.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 182.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 181.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 181.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 181.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 180.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 179.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 179.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 178.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 178.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 176.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 173.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 173.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 172.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 170.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 168.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 168.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 168.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 167.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 167.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 167.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 166.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 166.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 166.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 165.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 164.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 161.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 158.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 156.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 155.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 153.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 152.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 151.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 149.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 148.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 147.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 145.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 144.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 140.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 136.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 134.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 133.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 133.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 132.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 131.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 127.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 125.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 125.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 119.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

284.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 284.4
FF:10164-103B2 76 years, female 284.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.4
Pig sample Sample description nTPM
Caudate
nTPM: 97.4
Samples: 4

Max nTPM: 112.8
Min nTPM: 85.9
Sample A Female 91.6
Sample B Female 99.4
Sample C Male 112.8
Sample D Male 85.9

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