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ST6GALNAC6
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ST6GALNAC6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:138.4 nTPM
FANTOM5:145.6 Scaled Tags Per Million
Pig:52.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018890
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.4
Samples: 300

Max nTPM: 253.8
Min nTPM: 39.2
Std nTPM: 36.4
Median nTPM: 136.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 253.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 248.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 244.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 241.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 238.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 231.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 230.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 209.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 209.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 207.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 206.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 205.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 203.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 202.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 202.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 198.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 196.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 195.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 195.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 195.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 194.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 193.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 192.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 191.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 191.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 190.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 190.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 188.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 188.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 187.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 187.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 186.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 185.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 183.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 180.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 179.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 179.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 179.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 176.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 175.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 175.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 174.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 174.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 173.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 173.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 173.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 172.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 172.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 172.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 172.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 172.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 171.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 171.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 171.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 171.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 170.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 170.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 170.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 170.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 169.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 169.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 169.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 168.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 168.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 168.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 168.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 167.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 167.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 167.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 164.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 164.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 164.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 163.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 163.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 162.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 162.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 161.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 161.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 161.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 159.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 159.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 157.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 156.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 156.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 156.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 155.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 154.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 154.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 153.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 152.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 152.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 152.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 152.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 152.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 151.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 151.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 150.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 150.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 150.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 150.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 149.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 149.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 148.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 148.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 148.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 148.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 148.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 148.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 148.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 147.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 147.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 146.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 146.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 146.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 146.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 146.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 145.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 144.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 144.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 143.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 143.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 143.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 143.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 142.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 142.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 142.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 141.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 141.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 141.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 141.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 141.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 140.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 140.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 140.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 140.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 139.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 139.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 138.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 138.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 138.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 138.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 138.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 138.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 138.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 138.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 137.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 137.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 137.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 136.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 136.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 136.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 135.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 135.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 135.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 135.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 134.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 134.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 134.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 134.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 134.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 133.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 133.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 133.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 132.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 132.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 132.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 132.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 131.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 131.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 131.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 131.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 130.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 130.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 130.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 129.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 129.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 129.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 129.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 129.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 128.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 128.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 127.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 127.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 126.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 126.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 126.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 126.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 125.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 125.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 125.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 124.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 124.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 123.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 123.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 123.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 123.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 122.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 122.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 121.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 121.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 121.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 120.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 120.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 120.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 120.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 120.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 119.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 119.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 119.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 119.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 119.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 119.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 118.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 118.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 118.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 117.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 117.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 117.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 117.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 116.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 116.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 116.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 116.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 115.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 115.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 115.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 115.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 115.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 114.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 113.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 113.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 112.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 112.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 112.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 111.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 111.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 111.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 111.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 111.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 111.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 108.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 107.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 107.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 106.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 106.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 106.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 106.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 106.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 106.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 106.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 105.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 105.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 104.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 104.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 103.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 102.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 102.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 102.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 101.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 101.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 99.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 98.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 98.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 98.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 96.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 96.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 95.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 95.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 95.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 94.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 93.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 93.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 93.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 93.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 91.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 91.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 91.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 88.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 88.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 86.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 85.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 83.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 83.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 82.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 82.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 81.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 78.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 77.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 77.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 74.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 69.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 67.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 65.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 63.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 60.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 51.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 47.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 45.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 39.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

145.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 145.6
FF:10164-103B2 76 years, female 145.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.4
Pig sample Sample description nTPM
Caudate
nTPM: 52.4
Samples: 4

Max nTPM: 64.0
Min nTPM: 37.5
Sample A Female 37.5
Sample B Female 56.3
Sample C Male 64.0
Sample D Male 51.6

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