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TLCD1
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • STRUCTURE

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  • TLCD1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:11.7 nTPM
FANTOM5:4.3 Scaled Tags Per Million
Pig:2.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA042366
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.7
Samples: 300

Max nTPM: 50.0
Min nTPM: 1.3
Std nTPM: 7.1
Median nTPM: 9.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 50.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 47.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 39.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 36.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 36.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 33.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 32.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 30.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 30.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 29.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 27.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 27.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 26.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 25.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 25.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 24.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 24.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 23.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 23.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 23.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 21.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 21.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 21.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 21.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 21.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 21.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 21.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 20.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 20.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 20.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 20.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 19.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 19.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 19.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 19.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 19.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 18.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 18.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 18.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 17.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 17.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 17.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 17.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 17.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 17.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 17.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 17.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 17.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 17.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 17.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 17.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 17.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 17.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 16.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 16.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 16.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 16.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 15.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 15.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 15.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 15.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 15.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 15.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 15.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 15.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 15.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 15.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 15.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 15.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 15.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 15.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 14.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 14.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 14.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 14.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 14.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 14.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 14.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 14.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 14.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 14.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 14.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 14.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 14.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 14.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 14.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 14.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 14.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 14.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 13.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 13.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 13.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 13.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 13.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 13.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 13.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 13.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 13.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 13.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 13.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 12.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 12.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 12.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 12.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 12.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 12.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 12.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 12.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 12.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 12.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 12.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 12.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 12.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 12.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 12.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 12.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 12.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 12.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 12.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 12.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 11.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 11.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 11.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 11.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 11.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 11.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 11.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 11.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 11.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 11.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 10.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 10.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 10.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 10.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 10.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 10.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 10.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 10.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 10.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 10.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 10.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 10.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 10.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 10.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 10.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 10.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 10.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 9.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 9.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 9.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 9.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 9.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 9.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 9.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 9.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 9.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 9.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 9.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 9.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 9.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 9.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 9.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 8.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 8.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 8.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 8.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 8.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 8.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 8.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 8.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 8.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 8.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 8.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 8.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 8.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 8.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 8.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 8.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 8.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 8.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 8.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 8.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 8.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 8.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 8.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 8.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 8.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 8.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 8.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 8.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 8.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 8.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 8.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 7.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 7.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 7.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 7.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 7.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 7.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 7.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 7.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 7.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 7.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 7.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 7.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 7.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 7.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 7.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 7.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 7.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 7.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 7.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 7.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 7.2
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 7.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 7.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 7.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 7.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 7.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 7.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 6.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 6.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 6.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 6.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 6.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 6.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 6.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 6.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 6.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 6.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 6.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 6.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 6.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 6.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 6.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 6.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 6.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 6.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 6.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 6.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 6.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 6.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 6.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 6.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 5.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 5.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 5.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 5.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 5.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 5.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 5.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 5.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 5.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 5.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 5.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 5.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 5.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 5.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 5.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 5.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 5.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 5.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 5.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 5.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 5.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 5.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 5.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 5.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 4.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 4.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 4.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 4.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 4.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 4.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 4.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 4.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 4.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 4.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 4.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 4.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 4.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 4.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 4.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 3.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 3.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 3.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 3.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 3.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 2.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.3
FF:10164-103B2 76 years, female 4.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.9
Pig sample Sample description nTPM
Caudate
nTPM: 2.9
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.6
Sample A Female 2.6
Sample B Female 2.8
Sample C Male 3.1
Sample D Male 3.1

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