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  • SUMMARY

  • TISSUE

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • ENTREP3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:9.7 nTPM
FANTOM5:63.0 Scaled Tags Per Million
Pig:6.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006659
Glial cells Medium
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.7
Samples: 300

Max nTPM: 24.3
Min nTPM: 2.9
Std nTPM: 3.8
Median nTPM: 9.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 24.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 22.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 21.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 20.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 19.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 18.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 18.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 17.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 17.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 16.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 16.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 16.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 16.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 16.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 16.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 15.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 15.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 15.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 15.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 15.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 15.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 15.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 15.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 15.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 15.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 15.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 15.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 14.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 14.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 14.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 14.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 14.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 14.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 14.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 14.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 14.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 14.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 14.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 14.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 14.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 14.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 14.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 14.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 13.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 13.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 13.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 13.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 13.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 13.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 13.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 13.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 13.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 13.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 13.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 13.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 13.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 13.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 13.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 13.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 13.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 13.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 13.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 13.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 13.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 13.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 13.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 12.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 12.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 12.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 12.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 12.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 12.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 12.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 12.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 12.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 12.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 12.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 12.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 12.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 12.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 12.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 12.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 11.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 11.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 11.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 11.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 11.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 11.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 11.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 11.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 11.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 11.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 11.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 11.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 11.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 11.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 11.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 11.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 11.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 10.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 10.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 10.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 10.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 10.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 10.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 10.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 10.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 10.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 10.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 10.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 10.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 10.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 10.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 10.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 10.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 10.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 10.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 10.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 10.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 10.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 10.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 10.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 10.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 10.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 10.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 10.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 10.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 10.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 10.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 10.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 10.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 10.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 9.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 9.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 9.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 9.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 9.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 9.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 9.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 9.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 9.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 9.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 9.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 9.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 9.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 9.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 9.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 9.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 9.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 9.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 9.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 9.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 9.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 9.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 9.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 9.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 9.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 9.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 9.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 8.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 8.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 8.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 8.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 8.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 8.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 8.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 8.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 8.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 8.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 8.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 8.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 8.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 8.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 8.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 8.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 8.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 8.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 8.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 8.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 8.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 8.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 8.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 8.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 8.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 8.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 8.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 7.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 7.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 7.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 7.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 7.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 7.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 7.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 7.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 7.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 7.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 7.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 7.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 7.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 7.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 7.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 7.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 7.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 7.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 7.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 7.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 7.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 7.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 7.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 7.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 7.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 7.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 7.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 7.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 7.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 7.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 7.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 7.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 7.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 7.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 6.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 6.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 6.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 6.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 6.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 6.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 6.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 6.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 6.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 6.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 6.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 6.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 6.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 6.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 6.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 6.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 6.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 6.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 6.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 6.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 6.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 6.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 6.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 6.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 6.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 6.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 6.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 5.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 5.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 5.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 5.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 5.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 5.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 5.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 5.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 5.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 5.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 5.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 5.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 5.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 5.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 5.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 5.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 5.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 5.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 5.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 5.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 5.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 5.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 5.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 4.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 4.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 4.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 4.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 4.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 4.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 4.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 4.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 4.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 4.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 4.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 4.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 4.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 4.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 3.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 3.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 3.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 3.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 3.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 3.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 3.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 3.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 3.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.0
FF:10164-103B2 76 years, female 63.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.5
Pig sample Sample description nTPM
Caudate
nTPM: 6.5
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 6.0
Sample C Male 7.4
Sample D Male 7.0

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