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AP2M1
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • AP2M1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:199.5 nTPM
FANTOM5:249.2 Scaled Tags Per Million
Pig:188.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA036849
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 199.5
Samples: 300

Max nTPM: 593.4
Min nTPM: 99.4
Std nTPM: 65.9
Median nTPM: 190.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 593.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 409.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 393.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 377.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 370.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 363.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 343.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 331.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 324.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 322.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 315.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 313.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 311.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 310.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 310.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 309.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 308.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 307.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 305.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 303.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 297.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 297.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 296.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 295.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 294.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 293.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 293.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 290.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 287.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 286.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 286.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 284.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 284.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 281.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 280.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 277.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 277.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 277.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 275.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 275.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 273.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 272.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 271.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 270.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 268.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 268.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 267.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 265.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 264.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 261.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 261.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 260.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 259.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 259.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 258.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 257.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 257.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 256.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 254.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 253.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 252.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 252.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 252.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 251.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 250.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 250.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 250.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 249.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 248.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 248.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 248.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 247.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 246.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 246.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 246.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 245.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 243.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 242.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 240.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 239.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 238.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 238.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 236.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 232.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 232.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 232.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 231.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 230.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 230.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 230.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 228.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 227.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 227.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 226.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 226.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 225.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 224.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 223.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 223.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 222.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 222.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 221.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 221.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 221.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 220.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 219.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 217.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 216.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 214.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 214.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 213.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 213.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 212.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 212.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 212.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 211.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 211.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 210.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 210.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 209.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 209.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 209.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 209.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 208.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 208.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 208.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 206.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 206.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 206.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 205.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 204.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 204.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 204.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 204.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 202.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 202.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 201.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 201.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 200.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 198.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 198.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 196.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 196.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 194.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 194.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 194.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 194.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 194.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 193.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 190.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 189.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 189.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 189.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 188.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 188.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 187.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 186.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 185.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 185.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 184.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 183.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 183.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 181.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 181.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 181.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 180.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 178.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 177.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 176.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 175.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 173.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 172.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 172.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 171.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 171.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 170.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 170.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 168.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 165.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 165.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 165.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 164.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 163.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 163.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 163.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 161.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 161.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 161.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 160.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 160.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 159.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 158.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 157.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 156.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 156.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 155.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 155.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 154.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 154.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 154.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 154.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 154.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 154.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 153.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 153.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 153.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 153.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 153.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 153.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 153.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 152.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 152.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 151.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 151.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 151.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 150.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 150.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 150.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 149.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 149.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 148.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 148.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 148.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 148.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 148.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 147.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 147.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 146.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 146.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 145.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 145.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 145.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 144.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 144.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 144.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 144.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 143.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 143.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 142.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 142.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 142.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 141.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 140.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 140.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 140.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 139.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 138.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 138.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 138.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 138.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 137.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 137.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 134.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 133.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 133.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 133.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 133.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 132.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 132.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 132.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 130.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 129.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 129.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 129.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 128.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 127.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 125.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 125.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 125.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 124.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 124.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 123.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 121.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 121.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 121.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 121.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 120.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 120.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 119.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 119.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 119.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 118.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 118.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 118.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 118.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 116.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 116.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 116.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 115.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 115.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 115.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 115.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 114.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 112.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 112.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 111.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 110.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 110.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 109.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 99.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

249.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 249.2
FF:10164-103B2 76 years, female 249.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.2
Pig sample Sample description nTPM
Caudate
nTPM: 188.2
Samples: 4

Max nTPM: 223.7
Min nTPM: 162.9
Sample A Female 162.9
Sample B Female 195.0
Sample C Male 223.7
Sample D Male 171.3

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