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ATP1A1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ATP1A1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:160.2 nTPM
FANTOM5:336.7 Scaled Tags Per Million
Pig:360.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB018702Antibody CAB069993
Glial cells LowNot detected
Neuronal cells Not detectedLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 160.2
Samples: 300

Max nTPM: 421.2
Min nTPM: 30.1
Std nTPM: 90.9
Median nTPM: 146.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 421.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 393.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 390.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 382.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 380.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 379.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 372.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 370.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 364.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 361.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 359.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 353.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 337.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 334.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 331.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 330.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 327.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 326.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 324.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 322.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 315.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 313.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 313.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 313.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 311.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 309.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 308.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 307.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 303.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 301.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 300.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 289.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 287.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 283.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 279.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 277.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 274.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 273.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 271.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 270.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 270.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 269.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 268.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 266.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 263.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 260.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 258.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 257.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 253.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 252.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 251.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 249.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 249.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 244.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 244.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 242.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 242.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 239.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 239.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 233.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 230.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 230.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 230.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 229.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 228.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 228.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 227.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 226.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 226.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 226.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 226.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 225.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 224.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 224.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 224.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 223.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 222.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 222.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 222.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 221.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 218.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 218.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 217.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 217.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 215.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 215.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 215.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 214.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 213.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 210.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 208.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 207.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 205.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 205.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 203.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 202.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 200.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 199.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 198.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 198.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 198.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 197.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 194.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 194.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 190.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 190.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 189.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 187.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 187.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 185.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 183.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 183.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 183.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 182.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 182.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 181.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 179.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 177.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 177.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 175.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 174.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 174.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 174.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 174.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 174.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 173.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 173.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 170.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 170.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 167.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 166.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 164.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 162.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 162.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 162.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 160.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 159.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 159.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 158.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 157.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 157.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 157.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 153.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 152.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 151.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 148.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 148.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 147.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 147.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 147.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 146.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 145.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 144.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 144.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 138.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 138.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 135.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 135.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 132.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 132.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 131.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 131.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 129.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 128.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 127.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 125.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 125.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 125.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 125.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 125.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 121.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 121.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 120.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 119.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 116.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 116.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 115.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 114.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 114.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 112.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 112.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 111.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 111.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 110.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 108.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 108.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 108.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 107.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 107.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 106.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 106.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 106.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 102.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 101.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 101.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 100.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 99.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 99.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 98.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 97.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 95.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 95.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 94.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 94.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 94.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 94.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 92.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 92.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 90.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 90.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 89.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 88.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 88.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 87.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 85.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 85.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 84.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 83.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 82.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 82.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 81.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 81.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 79.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 79.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 79.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 78.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 78.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 77.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 77.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 76.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 76.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 76.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 75.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 74.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 74.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 74.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 74.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 74.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 73.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 73.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 73.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 72.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 71.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 71.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 69.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 69.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 69.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 69.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 67.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 67.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 67.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 66.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 66.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 66.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 65.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 64.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 64.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 64.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 63.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 63.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 62.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 62.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 61.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 61.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 60.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 60.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 60.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 59.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 59.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 58.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 58.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 57.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 57.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 57.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 57.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 56.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 55.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 54.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 54.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 52.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 52.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 50.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 48.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 48.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 48.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 48.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 47.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 46.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 46.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 44.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 41.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 41.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 40.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 40.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 40.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 39.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 39.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 34.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 33.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 30.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

336.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 336.7
FF:10164-103B2 76 years, female 336.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

360.0
Pig sample Sample description nTPM
Caudate
nTPM: 360.0
Samples: 4

Max nTPM: 453.9
Min nTPM: 276.3
Sample A Female 276.3
Sample B Female 341.4
Sample C Male 453.9
Sample D Male 368.3

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