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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:292.4 nTPM
FANTOM5:114.4 Scaled Tags Per Million
Pig:127.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA046693
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 292.4
Samples: 300

Max nTPM: 866.3
Min nTPM: 150.1
Std nTPM: 89.0
Median nTPM: 276.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 866.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 727.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 702.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 664.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 663.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 581.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 575.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 551.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 508.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 494.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 477.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 474.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 464.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 454.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 433.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 431.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 421.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 416.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 413.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 401.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 399.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 397.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 393.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 393.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 390.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 388.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 385.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 385.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 384.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 380.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 377.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 374.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 374.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 372.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 372.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 369.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 366.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 366.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 365.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 362.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 361.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 361.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 361.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 359.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 358.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 357.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 356.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 353.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 351.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 349.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 349.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 347.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 345.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 345.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 342.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 342.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 342.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 341.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 340.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 340.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 335.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 333.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 332.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 331.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 331.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 328.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 326.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 325.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 325.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 324.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 324.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 323.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 322.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 322.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 322.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 320.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 320.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 318.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 318.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 316.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 316.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 315.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 312.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 312.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 312.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 312.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 309.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 308.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 307.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 307.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 307.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 306.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 306.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 306.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 305.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 305.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 305.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 305.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 304.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 304.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 304.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 303.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 303.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 302.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 302.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 301.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 301.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 299.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 299.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 298.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 298.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 298.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 297.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 297.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 297.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 296.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 296.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 295.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 294.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 294.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 293.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 293.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 293.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 293.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 292.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 289.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 287.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 286.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 286.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 285.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 282.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 282.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 282.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 282.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 281.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 281.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 281.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 281.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 280.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 280.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 280.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 279.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 279.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 279.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 279.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 278.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 277.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 277.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 277.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 276.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 275.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 272.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 272.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 271.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 270.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 270.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 270.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 269.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 269.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 269.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 268.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 267.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 266.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 266.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 266.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 266.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 265.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 265.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 265.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 264.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 264.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 263.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 263.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 263.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 263.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 263.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 263.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 263.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 262.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 262.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 261.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 261.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 261.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 260.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 259.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 259.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 259.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 258.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 258.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 257.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 256.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 256.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 254.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 252.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 252.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 252.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 251.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 251.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 251.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 251.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 251.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 250.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 250.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 249.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 249.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 248.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 248.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 248.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 247.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 247.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 247.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 247.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 246.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 246.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 246.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 245.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 245.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 245.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 244.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 244.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 243.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 242.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 242.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 241.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 241.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 240.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 240.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 240.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 239.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 239.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 239.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 238.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 237.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 237.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 236.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 235.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 234.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 233.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 233.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 233.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 232.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 232.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 232.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 232.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 232.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 231.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 231.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 231.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 230.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 230.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 229.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 229.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 228.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 227.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 227.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 224.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 224.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 222.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 222.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 220.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 218.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 216.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 215.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 215.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 213.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 213.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 212.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 212.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 210.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 210.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 210.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 210.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 208.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 208.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 208.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 208.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 205.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 204.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 203.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 202.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 202.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 199.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 199.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 198.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 197.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 194.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 187.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 187.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 186.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 182.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 179.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 178.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 174.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 173.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 161.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 160.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 160.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 158.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 155.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 150.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.4
FF:10164-103B2 76 years, female 114.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.9
Pig sample Sample description nTPM
Caudate
nTPM: 127.9
Samples: 4

Max nTPM: 148.6
Min nTPM: 116.2
Sample A Female 118.1
Sample B Female 128.7
Sample C Male 148.6
Sample D Male 116.2

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