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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • BAALC
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:245.1 nTPM
FANTOM5:264.5 Scaled Tags Per Million
Pig:60.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA027132
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 245.1
Samples: 300

Max nTPM: 619.4
Min nTPM: 59.0
Std nTPM: 101.8
Median nTPM: 215.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 619.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 598.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 595.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 557.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 556.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 493.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 490.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 487.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 479.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 477.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 462.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 460.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 454.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 452.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 447.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 443.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 438.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 434.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 433.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 427.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 426.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 419.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 417.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 416.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 410.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 408.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 405.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 404.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 399.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 397.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 390.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 385.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 378.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 377.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 376.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 368.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 361.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 357.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 357.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 348.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 344.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 344.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 343.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 343.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 341.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 340.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 340.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 339.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 339.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 338.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 337.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 334.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 334.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 333.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 331.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 331.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 329.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 328.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 328.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 320.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 319.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 316.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 316.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 314.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 314.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 313.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 313.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 311.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 311.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 310.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 308.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 307.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 306.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 306.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 305.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 305.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 305.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 303.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 303.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 303.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 302.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 302.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 302.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 301.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 293.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 292.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 291.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 290.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 290.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 286.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 286.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 285.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 285.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 282.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 279.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 278.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 277.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 277.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 277.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 276.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 275.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 275.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 275.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 274.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 273.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 270.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 267.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 265.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 265.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 264.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 262.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 261.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 261.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 260.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 259.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 258.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 257.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 256.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 255.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 254.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 251.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 251.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 250.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 249.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 248.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 248.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 248.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 245.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 245.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 243.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 243.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 239.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 237.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 236.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 232.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 231.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 230.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 229.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 228.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 228.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 227.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 224.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 222.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 221.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 220.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 217.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 217.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 216.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 215.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 215.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 215.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 214.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 214.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 213.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 212.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 212.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 212.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 212.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 210.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 210.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 210.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 206.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 205.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 205.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 203.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 201.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 201.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 201.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 200.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 200.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 199.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 199.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 199.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 198.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 197.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 197.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 196.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 196.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 196.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 195.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 195.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 195.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 194.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 194.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 194.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 193.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 192.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 192.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 192.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 192.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 191.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 191.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 190.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 189.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 188.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 188.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 187.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 187.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 187.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 185.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 185.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 185.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 184.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 184.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 183.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 183.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 182.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 181.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 181.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 180.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 179.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 179.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 179.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 179.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 178.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 178.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 178.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 177.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 176.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 176.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 176.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 175.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 174.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 173.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 172.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 170.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 170.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 168.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 167.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 167.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 166.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 165.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 165.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 164.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 163.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 162.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 162.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 161.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 161.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 159.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 158.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 158.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 158.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 157.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 156.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 155.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 155.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 155.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 155.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 154.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 153.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 152.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 152.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 152.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 150.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 149.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 147.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 146.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 145.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 145.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 145.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 145.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 144.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 143.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 143.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 141.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 141.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 140.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 139.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 138.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 137.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 137.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 137.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 135.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 135.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 135.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 134.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 133.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 132.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 131.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 130.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 130.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 126.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 126.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 120.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 118.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 117.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 114.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 114.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 113.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 113.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 111.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 107.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 101.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 98.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 95.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 94.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 85.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 61.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 59.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 264.5
FF:10164-103B2 76 years, female 264.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.5
Pig sample Sample description nTPM
Caudate
nTPM: 60.5
Samples: 4

Max nTPM: 68.6
Min nTPM: 50.9
Sample A Female 50.9
Sample B Female 68.6
Sample C Male 64.8
Sample D Male 57.8

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