We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GHITM
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • GHITM
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:138.6 nTPM
FANTOM5:161.2 Scaled Tags Per Million
Pig:87.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA016464Antibody HPA061664
Glial cells Not detectedNot detected
Neuronal cells LowLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 138.6
Samples: 300

Max nTPM: 296.3
Min nTPM: 62.2
Std nTPM: 34.6
Median nTPM: 135.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 296.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 273.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 253.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 252.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 245.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 241.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 235.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 224.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 219.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 211.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 209.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 207.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 207.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 207.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 205.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 202.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 197.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 193.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 191.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 191.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 188.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 187.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 186.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 183.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 183.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 183.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 182.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 181.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 181.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 181.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 180.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 180.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 179.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 177.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 177.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 176.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 176.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 175.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 175.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 175.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 173.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 172.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 172.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 172.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 172.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 172.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 169.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 168.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 168.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 167.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 166.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 166.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 166.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 166.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 165.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 165.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 163.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 163.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 162.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 162.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 162.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 161.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 161.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 161.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 160.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 159.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 159.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 159.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 159.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 159.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 158.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 158.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 157.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 156.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 155.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 154.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 154.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 154.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 152.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 152.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 152.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 152.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 151.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 151.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 151.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 150.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 150.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 150.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 150.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 148.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 148.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 148.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 148.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 147.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 147.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 147.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 147.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 147.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 146.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 146.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 146.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 146.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 146.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 146.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 146.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 146.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 145.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 145.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 145.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 144.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 144.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 144.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 144.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 143.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 143.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 143.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 143.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 143.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 143.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 142.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 142.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 142.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 142.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 141.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 141.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 141.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 141.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 141.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 141.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 141.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 140.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 139.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 139.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 139.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 138.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 138.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 137.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 137.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 137.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 136.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 136.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 136.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 136.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 136.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 135.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 135.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 135.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 135.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 135.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 135.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 135.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 134.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 134.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 134.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 134.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 134.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 133.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 133.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 133.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 133.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 133.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 133.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 133.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 132.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 131.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 131.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 131.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 130.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 130.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 130.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 129.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 128.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 127.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 127.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 127.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 127.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 127.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 127.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 126.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 126.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 126.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 126.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 126.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 125.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 125.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 124.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 124.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 123.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 123.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 123.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 122.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 122.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 122.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 122.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 121.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 121.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 121.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 121.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 121.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 121.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 120.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 120.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 120.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 120.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 120.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 119.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 119.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 119.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 119.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 119.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 119.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 119.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 119.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 118.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 118.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 117.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 117.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 117.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 117.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 117.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 117.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 117.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 117.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 116.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 116.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 116.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 116.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 115.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 115.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 114.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 114.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 114.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 113.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 113.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 113.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 113.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 112.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 112.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 112.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 112.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 112.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 112.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 111.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 111.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 111.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 111.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 111.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 110.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 108.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 108.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 108.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 108.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 108.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 107.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 107.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 107.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 107.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 107.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 106.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 105.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 105.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 104.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 104.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 104.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 103.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 103.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 102.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 102.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 101.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 101.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 100.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 100.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 99.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 98.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 97.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 96.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 96.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 96.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 96.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 95.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 95.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 94.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 94.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 93.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 91.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 91.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 90.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 84.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 84.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 83.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 80.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 80.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 80.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 79.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 77.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 73.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 72.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 71.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 70.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 62.2
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 161.2
FF:10164-103B2 76 years, female 161.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.2
Pig sample Sample description nTPM
Caudate
nTPM: 87.2
Samples: 4

Max nTPM: 96.6
Min nTPM: 77.7
Sample A Female 86.2
Sample B Female 77.7
Sample C Male 96.6
Sample D Male 88.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo