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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PSMC3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:137.4 nTPM
FANTOM5:92.9 Scaled Tags Per Million
Pig:47.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006065
Glial cells High

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 137.4
Samples: 300

Max nTPM: 286.7
Min nTPM: 48.3
Std nTPM: 39.4
Median nTPM: 131.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 286.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 261.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 258.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 251.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 251.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 241.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 239.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 232.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 228.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 224.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 223.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 222.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 220.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 219.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 218.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 218.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 213.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 212.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 212.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 210.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 210.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 210.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 210.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 204.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 201.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 198.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 197.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 197.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 196.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 187.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 187.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 186.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 185.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 179.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 179.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 179.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 177.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 177.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 177.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 176.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 172.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 172.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 172.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 172.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 170.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 169.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 169.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 169.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 169.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 169.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 168.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 168.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 168.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 168.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 167.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 166.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 165.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 165.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 165.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 165.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 164.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 164.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 163.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 163.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 162.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 161.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 161.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 161.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 161.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 161.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 160.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 159.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 159.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 157.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 157.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 157.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 157.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 156.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 156.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 155.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 155.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 155.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 155.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 154.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 154.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 153.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 152.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 152.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 150.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 150.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 150.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 150.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 150.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 150.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 150.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 149.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 149.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 148.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 148.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 148.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 148.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 148.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 147.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 147.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 147.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 147.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 146.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 146.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 146.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 146.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 146.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 145.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 145.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 145.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 145.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 144.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 144.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 144.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 144.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 143.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 142.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 142.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 141.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 141.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 140.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 140.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 139.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 138.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 138.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 137.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 137.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 137.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 137.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 137.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 137.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 136.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 136.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 136.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 135.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 134.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 134.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 134.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 133.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 133.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 133.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 132.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 132.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 132.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 132.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 132.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 131.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 131.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 130.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 130.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 130.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 130.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 130.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 129.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 129.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 129.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 129.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 129.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 129.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 129.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 129.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 128.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 128.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 128.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 128.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 128.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 127.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 127.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 127.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 127.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 126.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 125.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 125.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 124.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 124.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 124.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 124.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 124.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 123.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 123.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 123.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 123.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 122.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 122.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 122.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 121.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 121.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 121.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 120.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 120.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 119.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 119.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 119.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 119.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 119.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 118.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 118.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 118.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 117.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 117.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 116.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 115.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 115.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 115.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 115.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 114.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 113.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 112.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 111.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 111.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 111.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 111.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 110.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 110.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 109.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 108.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 108.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 108.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 107.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 107.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 107.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 107.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 107.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 106.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 106.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 106.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 106.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 106.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 106.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 106.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 106.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 106.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 105.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 105.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 105.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 105.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 104.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 104.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 104.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 104.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 103.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 103.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 102.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 102.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 101.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 101.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 101.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 101.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 100.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 100.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 100.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 100.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 99.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 99.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 98.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 98.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 97.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 97.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 97.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 97.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 96.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 96.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 95.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 95.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 94.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 94.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 94.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 93.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 92.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 92.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 92.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 90.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 90.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 89.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 89.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 89.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 89.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 86.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 85.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 85.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 85.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 84.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 83.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 82.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 80.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 80.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 79.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 78.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 76.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 71.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 68.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 64.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 63.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 58.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 55.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 48.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 92.9
FF:10164-103B2 76 years, female 92.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.5
Pig sample Sample description nTPM
Caudate
nTPM: 47.5
Samples: 4

Max nTPM: 56.3
Min nTPM: 41.0
Sample A Female 41.0
Sample B Female 49.5
Sample C Male 56.3
Sample D Male 43.2

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