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NDUFB8
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • NDUFB8
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:356.0 nTPM
FANTOM5:208.2 Scaled Tags Per Million
Pig:52.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003886
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

356.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 356.0
Samples: 300

Max nTPM: 911.2
Min nTPM: 140.2
Std nTPM: 104.4
Median nTPM: 341.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 911.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 838.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 778.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 748.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 747.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 691.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 626.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 620.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 617.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 580.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 560.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 545.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 532.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 529.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 527.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 523.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 510.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 509.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 505.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 503.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 496.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 494.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 487.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 486.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 483.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 479.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 475.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 475.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 475.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 474.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 472.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 471.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 466.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 465.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 464.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 462.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 459.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 455.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 450.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 446.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 446.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 446.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 444.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 442.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 441.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 441.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 437.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 434.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 432.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 431.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 427.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 425.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 424.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 424.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 423.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 422.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 421.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 421.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 420.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 419.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 419.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 418.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 416.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 416.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 415.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 413.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 413.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 411.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 410.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 410.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 408.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 408.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 407.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 404.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 404.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 402.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 402.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 401.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 400.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 399.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 399.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 399.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 398.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 397.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 396.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 396.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 393.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 392.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 392.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 391.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 389.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 388.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 388.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 387.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 387.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 386.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 386.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 386.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 384.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 384.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 384.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 384.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 382.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 381.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 378.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 378.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 378.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 375.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 375.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 375.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 374.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 374.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 372.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 372.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 371.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 371.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 371.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 370.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 368.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 367.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 367.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 366.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 366.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 364.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 363.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 362.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 362.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 360.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 359.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 357.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 357.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 356.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 353.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 353.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 352.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 352.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 352.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 350.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 349.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 348.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 347.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 347.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 347.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 345.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 345.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 344.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 343.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 342.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 341.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 341.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 341.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 341.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 340.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 340.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 338.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 338.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 337.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 337.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 336.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 334.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 333.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 332.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 332.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 330.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 330.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 329.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 329.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 327.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 325.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 325.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 324.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 323.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 323.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 323.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 323.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 321.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 321.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 320.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 319.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 318.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 318.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 318.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 318.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 318.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 317.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 317.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 316.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 316.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 313.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 312.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 311.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 311.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 310.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 310.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 309.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 308.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 308.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 307.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 305.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 305.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 305.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 305.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 304.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 304.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 303.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 303.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 302.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 302.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 301.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 301.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 300.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 298.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 298.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 298.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 298.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 298.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 297.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 296.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 295.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 293.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 293.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 292.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 292.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 292.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 291.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 288.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 287.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 285.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 285.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 283.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 282.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 280.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 280.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 279.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 279.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 278.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 276.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 275.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 275.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 275.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 275.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 274.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 273.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 272.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 272.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 272.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 271.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 270.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 270.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 269.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 267.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 267.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 266.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 265.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 264.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 261.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 260.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 260.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 258.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 258.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 257.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 257.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 257.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 257.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 254.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 253.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 253.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 252.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 251.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 249.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 247.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 244.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 242.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 241.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 238.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 238.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 238.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 235.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 234.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 232.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 230.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 228.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 226.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 225.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 225.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 221.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 214.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 211.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 207.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 207.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 206.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 203.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 199.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 192.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 192.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 187.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 184.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 177.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 171.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 140.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

208.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 208.2
FF:10164-103B2 76 years, female 208.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.0
Pig sample Sample description nTPM
Caudate
nTPM: 52.1
Samples: 4

Max nTPM: 57.6
Min nTPM: 46.8
Sample A Female 46.8
Sample B Female 54.9
Sample C Male 57.6
Sample D Male 48.9

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