We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TERF2IP
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TERF2IP
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:145.6 nTPM
FANTOM5:278.2 Scaled Tags Per Million
Pig:54.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA006719Antibody CAB018660Antibody CAB018749
Glial cells MediumMediumLow
Neuronal cells -MediumHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 145.6
Samples: 300

Max nTPM: 296.6
Min nTPM: 66.4
Std nTPM: 35.4
Median nTPM: 140.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 296.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 240.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 235.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 235.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 231.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 229.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 220.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 220.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 220.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 218.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 217.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 216.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 213.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 211.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 207.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 206.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 206.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 205.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 202.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 201.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 201.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 200.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 200.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 200.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 199.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 199.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 197.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 196.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 194.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 194.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 193.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 192.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 191.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 190.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 188.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 188.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 187.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 187.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 187.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 187.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 186.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 185.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 185.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 184.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 184.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 183.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 182.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 182.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 181.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 181.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 180.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 179.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 179.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 179.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 179.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 178.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 178.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 177.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 177.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 175.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 175.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 174.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 174.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 174.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 173.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 173.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 173.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 172.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 171.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 169.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 169.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 169.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 168.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 168.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 167.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 167.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 166.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 166.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 166.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 165.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 165.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 165.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 165.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 164.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 164.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 164.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 164.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 163.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 162.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 162.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 162.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 161.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 161.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 160.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 160.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 160.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 159.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 159.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 158.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 158.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 158.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 158.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 158.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 158.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 157.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 157.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 157.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 156.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 156.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 155.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 155.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 155.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 155.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 154.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 154.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 153.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 153.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 153.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 153.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 153.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 152.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 152.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 152.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 151.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 151.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 150.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 150.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 150.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 150.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 150.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 149.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 149.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 148.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 147.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 146.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 146.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 146.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 145.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 145.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 145.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 144.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 144.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 144.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 143.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 143.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 142.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 142.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 141.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 140.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 140.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 140.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 140.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 140.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 139.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 139.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 139.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 139.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 138.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 138.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 138.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 137.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 136.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 136.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 135.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 135.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 135.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 135.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 135.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 135.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 135.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 134.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 134.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 134.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 134.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 133.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 133.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 133.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 133.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 132.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 132.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 132.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 132.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 131.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 131.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 130.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 130.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 130.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 130.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 129.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 128.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 128.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 128.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 128.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 127.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 127.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 126.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 126.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 126.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 126.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 125.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 125.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 125.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 124.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 124.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 124.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 123.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 123.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 123.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 123.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 123.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 123.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 123.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 121.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 121.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 121.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 121.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 121.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 121.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 121.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 121.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 120.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 119.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 119.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 118.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 118.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 117.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 117.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 117.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 116.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 116.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 116.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 116.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 116.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 116.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 116.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 116.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 115.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 115.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 115.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 115.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 115.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 114.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 114.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 114.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 113.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 113.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 112.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 112.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 111.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 110.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 110.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 110.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 110.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 110.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 110.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 109.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 109.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 108.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 108.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 108.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 107.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 107.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 107.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 106.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 105.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 105.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 105.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 105.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 103.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 103.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 102.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 102.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 101.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 100.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 99.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 99.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 98.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 98.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 97.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 97.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 95.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 95.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 95.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 95.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 95.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 93.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 93.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 93.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 93.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 92.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 92.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 90.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 89.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 89.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 89.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 89.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 84.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 84.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 82.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 66.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

278.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 278.2
FF:10164-103B2 76 years, female 278.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.2
Pig sample Sample description nTPM
Caudate
nTPM: 54.2
Samples: 4

Max nTPM: 61.2
Min nTPM: 47.2
Sample A Female 56.9
Sample B Female 51.5
Sample C Male 61.2
Sample D Male 47.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo