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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • SCG5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:154.8 nTPM
FANTOM5:172.3 Scaled Tags Per Million
Pig:67.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA013136Antibody HPA074618
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 154.8
Samples: 300

Max nTPM: 439.9
Min nTPM: 11.4
Std nTPM: 101.3
Median nTPM: 154.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 439.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 422.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 420.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 418.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 409.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 405.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 365.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 357.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 355.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 337.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 332.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 332.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 324.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 323.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 314.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 307.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 307.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 307.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 306.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 305.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 304.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 300.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 299.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 299.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 297.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 296.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 292.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 291.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 288.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 287.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 286.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 285.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 281.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 281.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 280.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 279.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 279.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 276.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 275.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 274.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 274.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 273.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 272.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 270.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 268.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 268.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 267.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 267.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 266.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 265.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 265.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 265.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 259.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 257.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 257.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 255.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 250.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 249.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 245.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 241.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 241.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 239.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 238.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 238.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 238.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 238.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 237.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 236.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 236.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 236.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 235.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 234.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 234.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 234.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 233.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 230.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 230.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 229.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 227.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 227.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 225.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 225.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 224.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 222.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 222.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 221.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 220.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 219.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 219.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 218.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 218.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 217.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 216.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 213.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 212.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 211.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 210.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 209.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 207.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 205.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 205.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 204.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 203.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 203.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 201.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 199.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 198.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 198.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 198.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 197.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 195.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 195.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 193.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 193.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 193.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 192.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 191.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 190.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 189.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 187.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 186.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 186.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 184.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 184.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 181.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 181.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 180.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 180.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 180.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 179.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 178.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 175.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 174.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 173.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 172.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 171.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 171.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 169.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 167.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 166.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 166.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 163.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 163.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 161.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 160.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 159.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 158.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 157.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 156.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 154.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 153.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 152.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 151.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 148.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 148.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 148.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 144.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 143.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 140.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 140.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 140.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 139.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 138.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 138.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 137.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 137.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 135.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 134.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 133.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 129.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 129.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 128.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 127.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 124.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 124.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 122.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 121.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 121.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 121.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 118.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 117.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 117.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 116.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 115.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 114.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 113.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 109.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 108.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 104.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 101.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 95.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 94.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 93.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 91.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 91.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 89.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 87.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 87.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 83.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 82.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 81.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 81.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 78.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 77.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 77.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 76.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 73.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 69.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 69.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 69.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 68.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 68.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 67.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 65.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 65.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 64.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 64.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 63.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 62.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 62.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 62.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 60.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 59.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 57.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 57.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 56.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 55.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 53.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 53.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 53.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 52.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 52.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 52.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 51.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 50.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 49.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 47.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 47.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 47.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 46.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 46.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 45.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 44.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 43.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 43.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 42.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 42.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 41.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 39.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 39.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 38.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 35.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 34.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 34.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 34.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 33.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 33.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 33.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 33.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 33.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 31.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 31.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 31.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 30.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 30.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 30.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 29.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 28.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 27.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 25.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 25.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 25.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 24.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 23.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 22.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 22.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 21.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 21.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 20.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 20.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 19.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 19.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 18.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 18.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 18.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 18.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 18.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 17.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 17.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 17.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 16.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 15.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 15.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 14.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 14.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 12.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 12.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 11.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 172.3
FF:10164-103B2 76 years, female 172.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.7
Pig sample Sample description nTPM
Caudate
nTPM: 67.7
Samples: 4

Max nTPM: 71.9
Min nTPM: 62.9
Sample A Female 68.3
Sample B Female 67.6
Sample C Male 71.9
Sample D Male 62.9

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