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GPRC5B
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  • SUMMARY

  • TISSUE

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • GPRC5B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Neuronal projections: Not detected
Synapses: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:183.7 nTPM
FANTOM5:418.3 Scaled Tags Per Million
Pig:197.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA015247
Glial cells Medium
Neuronal cells Not detected
Neuronal projections Not detected
Synapses Not detected

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA015247
Glial cells Medium
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 183.7
Samples: 300

Max nTPM: 463.3
Min nTPM: 44.1
Std nTPM: 61.7
Median nTPM: 176.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 463.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 420.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 362.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 350.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 338.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 335.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 335.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 323.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 320.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 319.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 319.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 313.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 306.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 304.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 304.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 300.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 291.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 288.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 287.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 284.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 282.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 281.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 280.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 274.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 273.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 273.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 269.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 267.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 266.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 266.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 265.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 262.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 262.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 261.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 259.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 254.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 253.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 252.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 252.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 251.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 250.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 249.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 248.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 246.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 246.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 245.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 242.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 241.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 239.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 237.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 236.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 235.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 235.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 234.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 234.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 233.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 232.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 231.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 230.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 228.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 227.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 227.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 226.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 226.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 222.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 221.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 221.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 219.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 219.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 219.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 218.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 218.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 216.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 216.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 216.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 215.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 215.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 214.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 211.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 211.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 210.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 210.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 209.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 209.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 208.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 208.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 208.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 208.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 207.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 206.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 206.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 206.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 205.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 205.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 204.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 204.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 203.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 203.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 202.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 201.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 201.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 199.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 199.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 199.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 199.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 197.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 196.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 195.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 195.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 195.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 194.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 193.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 192.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 192.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 191.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 191.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 191.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 190.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 190.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 190.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 190.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 190.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 190.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 189.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 189.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 189.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 188.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 188.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 187.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 186.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 185.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 184.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 184.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 184.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 183.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 183.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 183.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 182.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 182.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 181.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 180.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 180.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 179.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 179.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 179.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 179.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 178.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 178.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 177.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 177.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 176.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 175.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 174.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 174.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 173.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 172.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 172.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 171.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 171.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 170.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 170.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 170.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 170.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 169.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 169.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 169.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 168.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 167.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 167.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 166.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 166.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 166.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 165.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 165.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 163.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 162.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 162.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 162.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 161.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 160.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 160.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 160.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 160.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 160.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 159.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 159.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 158.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 158.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 157.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 157.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 157.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 157.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 157.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 156.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 156.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 156.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 155.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 155.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 155.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 155.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 154.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 153.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 153.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 153.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 153.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 152.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 151.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 151.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 150.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 149.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 149.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 149.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 149.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 148.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 148.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 147.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 147.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 147.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 147.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 146.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 145.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 144.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 144.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 144.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 143.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 143.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 142.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 142.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 142.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 142.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 141.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 141.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 141.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 139.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 139.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 138.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 138.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 137.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 136.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 136.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 136.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 136.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 135.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 134.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 132.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 131.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 130.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 128.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 127.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 127.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 125.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 124.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 124.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 124.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 123.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 122.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 121.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 121.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 119.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 119.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 119.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 117.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 117.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 117.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 115.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 115.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 115.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 113.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 112.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 112.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 112.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 110.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 110.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 109.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 109.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 108.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 107.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 107.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 107.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 106.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 105.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 104.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 104.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 100.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 97.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 95.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 90.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 90.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 89.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 88.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 87.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 85.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 83.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 83.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 70.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 69.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 67.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 64.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 56.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 44.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

418.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 418.3
FF:10164-103B2 76 years, female 418.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.1
Pig sample Sample description nTPM
Caudate
nTPM: 197.1
Samples: 4

Max nTPM: 231.0
Min nTPM: 162.5
Sample A Female 162.5
Sample B Female 209.2
Sample C Male 231.0
Sample D Male 185.7

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